Aliases for LINC00604 Gene

Subcategory (RNA class) for LINC00604 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00604 Gene

  • Long Intergenic Non-Protein Coding RNA 604 2 3 5
  • LINC00604 2 168
  • HSALNG0041357 167
  • NONHSAG040248 92

External Ids for LINC00604 Gene

Summaries for LINC00604 Gene

GeneCards Summary for LINC00604 Gene

LINC00604 (Long Intergenic Non-Protein Coding RNA 604) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00604 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00604 Gene

Genomics for LINC00604 Gene

GeneHancer (GH) Regulatory Elements for LINC00604 Gene

Promoters and enhancers for LINC00604 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J040263 Enhancer 0.4 FANTOM5 0.4 +23.2 23249 0.3 ZNF366 ZNF512 RNU1-150P RF00003-067 LINC00604
GH05J040258 Enhancer 0.2 FANTOM5 0.4 +18.4 18391 0.1 RNU1-150P RF00003-067 LINC00604
GH05J040252 Enhancer 0.2 Ensembl 0.4 +12.7 12734 0.2 CARD6 LINC00604 RF00003-067 RNU1-150P
GH05J040260 Enhancer 0.2 Ensembl 0.4 +20.3 20334 0.2 RNU1-150P RF00003-067 LINC00604
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00604 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00604 Gene

Genomic Locations for LINC00604 Gene
chr5:40,240,167-40,267,658
(GRCh38/hg38)
Size:
27,492 bases
Orientation:
Plus strand
chr5:40,260,759-40,267,759
(GRCh37/hg19)
Size:
7,001 bases
Orientation:
Plus strand

Genomic View for LINC00604 Gene

Genes around LINC00604 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00604 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00604 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for LINC00604 Gene

Proteins for LINC00604 Gene

Post-translational modifications for LINC00604 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00604 Gene

Domains & Families for LINC00604 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00604 Gene

Function for LINC00604 Gene

Phenotypes From GWAS Catalog for LINC00604 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00604 Gene

Localization for LINC00604 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00604 Gene

Pathways & Interactions for LINC00604 Gene

PathCards logo

SuperPathways for LINC00604 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00604 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00604 Gene

Drugs & Compounds for LINC00604 Gene

No Compound Related Data Available

Transcripts for LINC00604 Gene

mRNA/cDNA for LINC00604 Gene

4 RNACentral transcripts :
2 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
3 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00604 Gene

No ASD Table

Relevant External Links for LINC00604 Gene

GeneLoc Exon Structure for
LINC00604

Expression for LINC00604 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00604 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00604

genes like me logo Genes that share expression patterns with LINC00604: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00604 Gene

Orthologs for LINC00604 Gene

Evolution for LINC00604 Gene

ENSEMBL:
Gene Tree for LINC00604 (if available)
TreeFam:
Gene Tree for LINC00604 (if available)

No data available for Orthologs for LINC00604 Gene

Paralogs for LINC00604 Gene

No data available for Paralogs for LINC00604 Gene

Variants for LINC00604 Gene

Additional Variant Information for LINC00604 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00604

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00604 Gene

Disorders for LINC00604 Gene

No disorders were found for LINC00604 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC00604 Gene

Publications for LINC00604 Gene

No publications were found for LINC00604 Gene.

No data available for Mastermind for LINC00604 Gene

Products for LINC00604 Gene

Sources for LINC00604 Gene