Aliases for LINC00603 Gene

Subcategory (RNA class) for LINC00603 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00603 Gene

  • Long Intergenic Non-Protein Coding RNA 603 2 3 5
  • LINC00603 2 168
  • NONHSAG040246 92
  • HSALNG0041347 167

External Ids for LINC00603 Gene

Previous GeneCards Identifiers for LINC00603 Gene

  • GC05P040053

Summaries for LINC00603 Gene

GeneCards Summary for LINC00603 Gene

LINC00603 (Long Intergenic Non-Protein Coding RNA 603) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00603 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00603 Gene

Genomics for LINC00603 Gene

GeneHancer (GH) Regulatory Elements for LINC00603 Gene

Promoters and enhancers for LINC00603 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J039891 Enhancer 0.4 Ensembl 500.7 +0.7 663 1.2 FOS SPI1 JUN MYC LINC00603 piR-33605-342
GH05J040017 Enhancer 0.7 Ensembl ENCODE 4.6 +125.5 125462 1.6 EP300 FOS CEBPB CHD2 JUN SPI1 RCOR1 JUND MAX RAD21 PTGER4 LINC00603 KRT18P56 lnc-PTGER4-5 FJ601666-061
GH05J040052 Enhancer 0.7 Ensembl 4.8 +160.9 160863 0.8 HES1 NCOR1 NFIC FOSL1 FOS FOSL2 CEBPB JUN TAL1 JUND LINC00603 lnc-PTGER4-5 KRT18P56 FJ601666-061
GH05J039946 Enhancer 0.7 Ensembl ENCODE 4.7 +55.2 55163 4.2 CTCF REST RAD21 SMC3 YY1 RFX5 ZNF654 ZNF143 LINC00603 FJ601666-061 KRT18P56 lnc-PTGER4-5
GH05J040108 Enhancer 0.6 Ensembl ENCODE 4.2 +217.0 216963 2.2 ZBTB26 CEBPB STAT3 JUND EP300 STAT1 LINC00603 piR-50968-101 piR-50968-100
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00603 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00603 Gene

Genomic Locations for LINC00603 Gene
chr5:39,892,138-40,053,324
(GRCh38/hg38)
Size:
161,187 bases
Orientation:
Plus strand
chr5:40,052,393-40,053,426
(GRCh37/hg19)
Size:
1,034 bases
Orientation:
Plus strand

Genomic View for LINC00603 Gene

Genes around LINC00603 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00603 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00603 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00603 Gene

Proteins for LINC00603 Gene

Post-translational modifications for LINC00603 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00603 Gene

Domains & Families for LINC00603 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00603 Gene

Function for LINC00603 Gene

Phenotypes From GWAS Catalog for LINC00603 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00603 Gene

Localization for LINC00603 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00603 Gene

Pathways & Interactions for LINC00603 Gene

PathCards logo

SuperPathways for LINC00603 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00603 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00603 Gene

Drugs & Compounds for LINC00603 Gene

No Compound Related Data Available

Transcripts for LINC00603 Gene

mRNA/cDNA for LINC00603 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
2 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00603 Gene

No ASD Table

Relevant External Links for LINC00603 Gene

GeneLoc Exon Structure for
LINC00603

Expression for LINC00603 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00603 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00603 Gene

This gene is overexpressed in Artery - Tibial (x17.4), Adipose - Subcutaneous (x5.7), and Nerve - Tibial (x4.4).
genes like me logo Genes that share expression patterns with LINC00603: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00603 Gene

Orthologs for LINC00603 Gene

Evolution for LINC00603 Gene

ENSEMBL:
Gene Tree for LINC00603 (if available)
TreeFam:
Gene Tree for LINC00603 (if available)

No data available for Orthologs for LINC00603 Gene

Paralogs for LINC00603 Gene

No data available for Paralogs for LINC00603 Gene

Variants for LINC00603 Gene

Additional dbSNP identifiers (rs#s) for LINC00603 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00603 Gene

Variant ID Type Subtype PubMed ID
nsv597860 CNV gain 21841781
nsv818347 CNV gain 17921354
nsv830266 CNV gain+loss 17160897

Additional Variant Information for LINC00603 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00603

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00603 Gene

Disorders for LINC00603 Gene

Additional Disease Information for LINC00603

No disorders were found for LINC00603 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00603 Gene

Publications for LINC00603 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 54

Products for LINC00603 Gene

Sources for LINC00603 Gene