Aliases for LINC00603 Gene

Subcategory (RNA class) for LINC00603 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00603 Gene

  • Long Intergenic Non-Protein Coding RNA 603 2 3 5
  • LINC00603 2 5 165
  • NONHSAG040246.2 91
  • HSALNG0041347 164

External Ids for LINC00603 Gene

Previous GeneCards Identifiers for LINC00603 Gene

  • GC05P040053

Summaries for LINC00603 Gene

GeneCards Summary for LINC00603 Gene

LINC00603 (Long Intergenic Non-Protein Coding RNA 603) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00603 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00603 Gene

Genomics for LINC00603 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00603 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J039891 Enhancer 0.3 Ensembl 600.7 +0.7 663 1.2 SPI1 JUN LINC00603 piR-33605-342 DAB2 PTGER4
GH05J040017 Enhancer 0.7 Ensembl ENCODE 4.6 +125.5 125462 1.6 CEBPB CHD2 JUN RCOR1 JUND MAX EP300 RAD21 SPI1 STAT3 PTGER4 LINC00603 KRT18P56 FJ601666-061 DAB2
GH05J040052 Enhancer 0.7 Ensembl 4.8 +160.9 160863 0.8 SOX6 TCF12 HES1 CEBPB JUN JUND NCOR1 FOSL1 NFIC EP300 LINC00603 KRT18P56 FJ601666-061 PTGER4 DAB2
GH05J039946 Enhancer 0.7 Ensembl ENCODE 4.7 +55.2 55163 4.2 CTCF REST RAD21 YY1 SMC3 RFX5 ZNF654 LINC00603 FJ601666-061 KRT18P56 DAB2 PTGER4
GH05J040108 Enhancer 0.6 Ensembl ENCODE 4.2 +217.0 216963 2.2 ZBTB26 CEBPB JUND EP300 STAT1 LINC00603 piR-50968-101 piR-50968-100 PTGER4 DAB2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00603 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00603 Gene

Genomic Locations for LINC00603 Gene
chr5:39,892,138-40,053,324
(GRCh38/hg38)
Size:
161,187 bases
Orientation:
Plus strand
chr5:40,052,393-40,053,426
(GRCh37/hg19)
Size:
1,034 bases
Orientation:
Plus strand

Genomic View for LINC00603 Gene

Genes around LINC00603 on UCSC Golden Path with GeneCards custom track
LINC00603 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00603 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00603 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00603 Gene

Proteins for LINC00603 Gene

Post-translational modifications for LINC00603 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00603 Gene

Domains & Families for LINC00603 Gene

Gene Families for LINC00603 Gene

genes like me logo Genes that share domains with LINC00603: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00603 Gene

Function for LINC00603 Gene

Phenotypes From GWAS Catalog for LINC00603 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00603 Gene

Localization for LINC00603 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00603 Gene

Pathways & Interactions for LINC00603 Gene

PathCards logo

SuperPathways for LINC00603 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00603 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00603 Gene

Drugs & Compounds for LINC00603 Gene

No Compound Related Data Available

Transcripts for LINC00603 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00603 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000385F6A_9606 lncRNA 562 4

HGNC: 43918,

RefSeq: NR_104633,

LNCipedia: LINC00603:1,

NONCODE: NONHSAT101136.2,

URS0000AAD8C9_9606 lncRNA 733 3

Ensembl: ENST00000507027 (view in UCSC) ,

LncBook: HSALNT0086945,

LNCipedia: LINC00603:3,

URS0000A962B9_9606 lncRNA 570 3

Ensembl: ENST00000638070 (view in UCSC) ,

LncBook: HSALNT0086939,

LNCipedia: LINC00603:2,

LINC00603 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00603 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00603 Gene

No ASD Table

Relevant External Links for LINC00603 Gene

GeneLoc Exon Structure for
LINC00603

Expression for LINC00603 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00603 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00603 Gene

This gene is overexpressed in Artery - Tibial (x17.4), Adipose - Subcutaneous (x5.7), and Nerve - Tibial (x4.4).
genes like me logo Genes that share expression patterns with LINC00603: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00603 Gene

Orthologs for LINC00603 Gene

Evolution for LINC00603 Gene

ENSEMBL:
Gene Tree for LINC00603 (if available)
TreeFam:
Gene Tree for LINC00603 (if available)

No data available for Orthologs for LINC00603 Gene

Paralogs for LINC00603 Gene

No data available for Paralogs for LINC00603 Gene

Variants for LINC00603 Gene

Additional dbSNP identifiers (rs#s) for LINC00603 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00603 Gene

Variant ID Type Subtype PubMed ID
nsv597860 CNV gain 21841781
nsv818347 CNV gain 17921354
nsv830266 CNV gain+loss 17160897

Additional Variant Information for LINC00603 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00603

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00603 Gene

Disorders for LINC00603 Gene

No disorders were found for LINC00603 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00603 Gene

Publications for LINC00603 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3

Products for LINC00603 Gene

Sources for LINC00603 Gene