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Aliases for LINC00596 Gene

Subcategory (RNA class) for LINC00596 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00596 Gene

  • Long Intergenic Non-Protein Coding RNA 596 2 3 5
  • C14orf165 3 4
  • Chromosome 14 Open Reading Frame 165 2
  • CNSLT1I7G 3

External Ids for LINC00596 Gene

Previous HGNC Symbols for LINC00596 Gene

  • C14orf165

Previous GeneCards Identifiers for LINC00596 Gene

  • GC14M024392

Summaries for LINC00596 Gene

GeneCards Summary for LINC00596 Gene

LINC00596 (Long Intergenic Non-Protein Coding RNA 596) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00596 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00596 Gene

Genomics for LINC00596 Gene

GeneHancer (GH) Regulatory Elements for LINC00596 Gene

Promoters and enhancers for LINC00596 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I023936 Enhancer 0.7 ENCODE 550.8 -2.0 -1979 0.2 SOX13 FOXA2 MAX ZNF644 RAD21 YY1 TEAD3 HNF4G NR2F6 HOMEZ LINC00596 DHRS4
GH14I023929 Enhancer 0.8 ENCODE 0.8 +4.6 4631 0.2 MLX ARID4B DNMT3B ZNF48 ZSCAN9 RAD21 ZNF143 MIXL1 RXRA MIER2 LOC105370411 LINC00596
GH14I023931 Enhancer 0.7 ENCODE 0.8 +2.3 2325 0.8 HDAC1 TEAD4 TAL1 PYGO2 CCNT2 CTBP1 NCOR1 CBFA2T2 SMARCE1 RFX1 DHRS4L2 LINC00596 LOC105370411
GH14I023939 Enhancer 0.9 ENCODE 0.4 -5.4 -5370 0.8 HDAC1 ARNT ARID4B DMAP1 RARA TCF12 ATF7 THAP11 CAVIN1 ZBTB2 DHRS4-AS1 DHRS4 LINC00596
GH14I023951 Enhancer 0.7 ENCODE 0.4 -17.4 -17369 0.2 CTCF TFAP4 TAF1 ZNF792 SAP130 ARID4B DMAP1 ZNF644 ZNF48 RAD21 DHRS4 DHRS4-AS1 KHNYN ACIN1 RNA5SP383 TM9SF1 RNF31 TINF2 LOC102724814 CIDEB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00596 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00596 Gene

Genomic Locations for LINC00596 Gene
chr14:23,838,474-23,934,568
(GRCh38/hg38)
Size:
96,095 bases
Orientation:
Minus strand
chr14:24,391,456-24,403,777
(GRCh37/hg19)

Genomic View for LINC00596 Gene

Genes around LINC00596 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00596 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00596 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00596 Gene

Proteins for LINC00596 Gene

  • Protein details for LINC00596 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86U02-CN165_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00596
    Protein Accession:
    Q86U02

    Protein attributes for LINC00596 Gene

    Size:
    117 amino acids
    Molecular mass:
    13541 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00596 Gene

Post-translational modifications for LINC00596 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00596 Gene

Domains & Families for LINC00596 Gene

Protein Domains for LINC00596 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00596: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00596 Gene

Function for LINC00596 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00596 Gene

Localization for LINC00596 Gene

Subcellular locations from UniProtKB/Swiss-Prot for LINC00596 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for LINC00596 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with LINC00596: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for LINC00596 Gene

Pathways & Interactions for LINC00596 Gene

SuperPathways for LINC00596 Gene

No Data Available

Interacting Proteins for LINC00596 Gene

Gene Ontology (GO) - Biological Process for LINC00596 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0048741 NOT skeletal muscle fiber development IBA --
genes like me logo Genes that share ontologies with LINC00596: view

No data available for Pathways by source and SIGNOR curated interactions for LINC00596 Gene

Drugs & Compounds for LINC00596 Gene

No Compound Related Data Available

Transcripts for LINC00596 Gene

mRNA/cDNA for LINC00596 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00596 Gene

No ASD Table

Relevant External Links for LINC00596 Gene

GeneLoc Exon Structure for
LINC00596
ECgene alternative splicing isoforms for
LINC00596

Expression for LINC00596 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00596 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00596 Gene

This gene is overexpressed in Testis (x41.7) and Pancreas (x5.4).

NURSA nuclear receptor signaling pathways regulating expression of LINC00596 Gene:

LINC00596
genes like me logo Genes that share expression patterns with LINC00596: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00596 Gene

Orthologs for LINC00596 Gene

Evolution for LINC00596 Gene

ENSEMBL:
Gene Tree for LINC00596 (if available)
TreeFam:
Gene Tree for LINC00596 (if available)

No data available for Orthologs for LINC00596 Gene

Paralogs for LINC00596 Gene

No data available for Paralogs for LINC00596 Gene

Variants for LINC00596 Gene

Sequence variations from dbSNP and Humsavar for LINC00596 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000002573 -- 23,865,736(-) C/G genic_downstream_transcript_variant, intron_variant
rs1000058296 -- 23,915,195(-) C/G intron_variant
rs1000083981 -- 23,915,647(-) C/T intron_variant
rs1000111737 -- 23,915,024(-) G/A intron_variant
rs1000112219 -- 23,872,193(-) A/G genic_downstream_transcript_variant, intron_variant

Additional Variant Information for LINC00596 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00596

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00596 Gene

Disorders for LINC00596 Gene

Additional Disease Information for LINC00596

No disorders were found for LINC00596 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00596 Gene

Publications for LINC00596 Gene

  1. The DNA sequence and analysis of human chromosome 14. (PMID: 12508121) Heilig R … Weissenbach J (Nature 2003) 3 4 58
  2. Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder. (PMID: 18711365) Ferreira MA … Wellcome Trust Case Control Consortium (Nature genetics 2008) 3 58

Products for LINC00596 Gene

Sources for LINC00596 Gene

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