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Aliases for LINC00593 Gene

Subcategory (RNA class) for LINC00593 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC00593 Gene

  • Long Intergenic Non-Protein Coding RNA 593 2 3 5
  • Chromosome 15 Open Reading Frame 50 2
  • C15orf50 3

External Ids for LINC00593 Gene

Previous HGNC Symbols for LINC00593 Gene

  • C15orf50

Previous GeneCards Identifiers for LINC00593 Gene

  • GC15P070132

Summaries for LINC00593 Gene

GeneCards Summary for LINC00593 Gene

LINC00593 (Long Intergenic Non-Protein Coding RNA 593) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00593 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00593 Gene

Genomics for LINC00593 Gene

GeneHancer (GH) Regulatory Elements for LINC00593 Gene

Promoters and enhancers for LINC00593 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I069852 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.4 +18.8 18782 3.7 FOXA2 FEZF1 RAD21 SMARCC2 RCOR1 FOS DEK SMARCC1 CEBPB MAFF MIR629 LINC00593 GC15P069802 GC15M070005
GH15I069824 Enhancer 0.6 UCNEbase 0.4 -10.7 -10676 0.2 PRDM6 ZSCAN4 ZNF18 ENSG00000259309 LINC00593 GC15P069802
GH15I069861 Enhancer 0.4 ENCODE 0.3 +27.2 27201 2.5 GATA3 FOS EGR2 LINC00593 GC15M070005
GH15I069868 Enhancer 0.4 FANTOM5 0.3 +33.3 33333 0.2 ZMYM3 TLE3 LINC00593 GC15M070005
GH15I069926 Enhancer 0.6 ENCODE 0.2 +90.9 90943 0.2 SMARCE1 PKNOX1 MTA2 CHD1 NEUROD1 SIN3A DPF2 GATA3 FOS GC15M070005 LINC00593
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00593 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00593 Gene

Genomic Locations for LINC00593 Gene
7,887 bases
Plus strand

Genomic View for LINC00593 Gene

Genes around LINC00593 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00593 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00593 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00593 Gene

Proteins for LINC00593 Gene

Post-translational modifications for LINC00593 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00593 Gene

Domains & Families for LINC00593 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00593 Gene

Function for LINC00593 Gene

Phenotypes From GWAS Catalog for LINC00593 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00593 Gene

Localization for LINC00593 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00593 Gene

Pathways & Interactions for LINC00593 Gene

SuperPathways for LINC00593 Gene

No Data Available

Interacting Proteins for LINC00593 Gene

Gene Ontology (GO) - Biological Process for LINC00593 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC00593 Gene

Drugs & Compounds for LINC00593 Gene

No Compound Related Data Available

Transcripts for LINC00593 Gene

mRNA/cDNA for LINC00593 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00593 Gene

Long intergenic non-protein coding RNA 593:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00593 Gene

No ASD Table

Relevant External Links for LINC00593 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC00593 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00593 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00593 Gene

This gene is overexpressed in Testis (x21.8) and Whole Blood (x17.7).

NURSA nuclear receptor signaling pathways regulating expression of LINC00593 Gene:


SOURCE GeneReport for Unigene cluster for LINC00593 Gene:

genes like me logo Genes that share expression patterns with LINC00593: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00593 Gene

Orthologs for LINC00593 Gene

Evolution for LINC00593 Gene

Gene Tree for LINC00593 (if available)
Gene Tree for LINC00593 (if available)

No data available for Orthologs for LINC00593 Gene

Paralogs for LINC00593 Gene

No data available for Paralogs for LINC00593 Gene

Variants for LINC00593 Gene

Sequence variations from dbSNP and Humsavar for LINC00593 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000112521 -- 69,841,053(+) A/G intron_variant
rs1000373575 -- 69,843,251(+) A/G downstream_transcript_variant
rs1000488140 -- 69,842,961(+) C/T non_coding_transcript_variant
rs1000746512 -- 69,838,073(+) C/G intron_variant
rs1000903505 -- 69,839,398(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00593 Gene

Variant ID Type Subtype PubMed ID
nsv523368 CNV loss 19592680

Additional Variant Information for LINC00593 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00593 Gene

Disorders for LINC00593 Gene

Additional Disease Information for LINC00593

No disorders were found for LINC00593 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00593 Gene

Publications for LINC00593 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58

Products for LINC00593 Gene

Sources for LINC00593 Gene

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