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Aliases for LINC00592 Gene

Subcategory (RNA class) for LINC00592 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00592 Gene

  • Long Intergenic Non-Protein Coding RNA 592 2 3 5

External Ids for LINC00592 Gene

Previous GeneCards Identifiers for LINC00592 Gene

  • GC12P052605
  • GC12P052210

Summaries for LINC00592 Gene

GeneCards Summary for LINC00592 Gene

LINC00592 (Long Intergenic Non-Protein Coding RNA 592) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00592 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00592 Gene

Genomics for LINC00592 Gene

GeneHancer (GH) Regulatory Elements for LINC00592 Gene

Promoters and enhancers for LINC00592 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J052163 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 600.7 +0.9 902 2.9 ELF3 CTCF ZSCAN21 MAFK SP7 KLF14 CREM MZF1 RAD21 CREB1 LINC00592 GC12M052162 KRT80 KRT81 KRT7 KRT86 KRT87P KRT83 KRT84 ACVR1B
GH12J052228 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 6.2 +70.4 70407 11.5 MAFK MYC ELF1 FOSL2 CREB1 POLR2A ZSCAN4 REST CTBP1 ZNF341 KRT7 METTL7AP1 KRT80 KRT83 KRT81 LINC00592 KRT7-AS GC12P052156
GH12J052242 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 6 +82.4 82384 8.6 SP1 RERE ZNF687 NFIB MAFK MYC ELF1 SP7 RELA CREM KRT86 KRT7-AS KRT7 HNRNPA3P10 ZNF740 CSAD ENSG00000257808 KRT81 KRT83 KRT84
GH12J052196 Enhancer 1.5 FANTOM5 ENCODE dbSUPER 6.6 +43.8 43818 22.5 ZNF473 MTA3 ELF3 CTCF MNT CEBPG NFIB ZSCAN21 NCOA3 MAFK ZNF740 KRT7 HNRNPA3P10 KRT86 KRT87P KRT81 POU6F1 KRT83 ENSG00000257337 KRT7-AS
GH12J052180 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.3 +24.4 24350 15.1 NFIB ZSCAN21 MAFK MYC SP7 POLR2A SP1 PRDM1 MZF1 EGR1 KRT80 ZNF740 HNRNPA3P10 CSAD ENSG00000257808 KRT7 POU6F1 SPRYD3 C12orf80 NR4A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00592 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00592 Gene

Genomic Locations for LINC00592 Gene
chr12:52,164,115-52,223,813
(GRCh38/hg38)
Size:
59,699 bases
Orientation:
Plus strand
chr12:52,604,714-52,617,597
(GRCh37/hg19)
Size:
12,884 bases
Orientation:
Plus strand

Genomic View for LINC00592 Gene

Genes around LINC00592 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00592 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00592 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00592 Gene

Proteins for LINC00592 Gene

Post-translational modifications for LINC00592 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00592 Gene

Domains & Families for LINC00592 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00592 Gene

Function for LINC00592 Gene

Phenotypes From GWAS Catalog for LINC00592 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00592 Gene

Localization for LINC00592 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00592 Gene

Pathways & Interactions for LINC00592 Gene

PathCards logo

SuperPathways for LINC00592 Gene

No Data Available

Interacting Proteins for LINC00592 Gene

Gene Ontology (GO) - Biological Process for LINC00592 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00592 Gene

Drugs & Compounds for LINC00592 Gene

No Compound Related Data Available

Transcripts for LINC00592 Gene

mRNA/cDNA for LINC00592 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Unigene Clusters for LINC00592 Gene

Long intergenic non-protein coding RNA 592:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00592 Gene

No ASD Table

Relevant External Links for LINC00592 Gene

GeneLoc Exon Structure for
LINC00592
ECgene alternative splicing isoforms for
LINC00592

Expression for LINC00592 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00592 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00592 Gene

This gene is overexpressed in Testis (x22.5), Skin - Sun Exposed (Lower leg) (x7.2), and Skin - Not Sun Exposed (Suprapubic) (x6.6).

NURSA nuclear receptor signaling pathways regulating expression of LINC00592 Gene:

LINC00592

SOURCE GeneReport for Unigene cluster for LINC00592 Gene:

Hs.662443
genes like me logo Genes that share expression patterns with LINC00592: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00592 Gene

Orthologs for LINC00592 Gene

Evolution for LINC00592 Gene

ENSEMBL:
Gene Tree for LINC00592 (if available)
TreeFam:
Gene Tree for LINC00592 (if available)

No data available for Orthologs for LINC00592 Gene

Paralogs for LINC00592 Gene

No data available for Paralogs for LINC00592 Gene

Variants for LINC00592 Gene

Sequence variations from dbSNP and Humsavar for LINC00592 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000033848 -- 52,218,200(+) G/T intron_variant
rs1000612004 -- 52,222,772(+) C/A intron_variant
rs1000899869 -- 52,222,427(+) T/G intron_variant
rs1001033632 -- 52,217,211(+) G/A intron_variant
rs1001655644 -- 52,209,602(+) T/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00592 Gene

Variant ID Type Subtype PubMed ID
dgv486e212 CNV loss 25503493
esv2759899 CNV gain 17122850
esv3580275 CNV loss 25503493
nsv469381 CNV loss 19166990
nsv558899 CNV loss 21841781
nsv832409 CNV loss 17160897

Additional Variant Information for LINC00592 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00592

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00592 Gene

Disorders for LINC00592 Gene

Additional Disease Information for LINC00592

No disorders were found for LINC00592 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00592 Gene

Publications for LINC00592 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58

Products for LINC00592 Gene

Sources for LINC00592 Gene

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