Aliases for LINC00587 Gene

RNA type for LINC00587 Gene

lncRNA

Aliases for LINC00587 Gene

External Ids for LINC00587 Gene

Previous HGNC Symbols for LINC00587 Gene

  • C9orf107

Previous GeneCards Identifiers for LINC00587 Gene

  • GC09P105282
  • GC09P102519

Summaries for LINC00587 Gene

GeneCards Summary for LINC00587 Gene

LINC00587 (Long Intergenic Non-Protein Coding RNA 587) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00587 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00587 Gene

Genomics for LINC00587 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00587 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J102642 Enhancer 0.3 Ensembl ENCODE 0.1 +170.3 170309 1 ZYG11AP1 lnc-GRIN3A-5 piR-53772-002 LINC00587 CYLC2 GRIN3A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00587 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00587 Gene

Latest Assembly
chr9:102,472,592-102,658,067
(GRCh38/hg38)
Size:
185,476 bases
Orientation:
Plus strand

Previous Assembly
chr9:105,281,919-105,419,791
(GRCh37/hg19 by Entrez Gene)
Size:
137,873 bases
Orientation:
Plus strand

chr9:105,281,918-105,419,796
(GRCh37/hg19 by Ensembl)
Size:
137,879 bases
Orientation:
Plus strand

Genomic View for LINC00587 Gene

Genes around LINC00587 on UCSC Golden Path with GeneCards custom track
LINC00587 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00587 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00587 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00587 Gene

Proteins for LINC00587 Gene

  • Protein details for LINC00587 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    B1AMM8-CI107_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00587
    Protein Accession:
    B1AMM8

    Protein attributes for LINC00587 Gene

    Size:
    73 amino acids
    Molecular mass:
    8554 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00587 Gene

Post-translational modifications for LINC00587 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00587 Gene

Domains & Families for LINC00587 Gene

Gene Families for LINC00587 Gene

genes like me logo Genes that share domains with LINC00587: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00587 Gene

Function for LINC00587 Gene

Phenotypes From GWAS Catalog for LINC00587 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00587 Gene

Localization for LINC00587 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00587 Gene

Pathways & Interactions for LINC00587 Gene

PathCards logo

SuperPathways for LINC00587 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00587 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00587 Gene

Drugs & Compounds for LINC00587 Gene

No Compound Related Data Available

Transcripts for LINC00587 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00587 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00004A3E21_9606 lncRNA 595 3

Ensembl: ENST00000374801 (view in UCSC) ,

LNCipedia: LINC00587:1,

NONCODE: NONHSAT133767.2,

URS000075CA14_9606 lncRNA 589 2

RefSeq: NR_103830,

LNCipedia: LINC00587:2,

URS0001BD163D_9606 lncRNA 1460 1

LncBook: HSALNT0153264,

URS0001BECC22_9606 lncRNA 1445 1

LncBook: HSALNT0153276,

URS0001BCB8F0_9606 lncRNA 1151 1

LncBook: HSALNT0153274,

LINC00587 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00587 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00587 Gene

No ASD Table

Relevant External Links for LINC00587 Gene

GeneLoc Exon Structure for
LINC00587

Expression for LINC00587 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00587 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00587

SOURCE GeneReport for Unigene cluster for LINC00587 Gene:

Hs.385790
genes like me logo Genes that share expression patterns with LINC00587: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00587 Gene

Orthologs for LINC00587 Gene

Evolution for LINC00587 Gene

ENSEMBL:
Gene Tree for LINC00587 (if available)
TreeFam:
Gene Tree for LINC00587 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC00587

No data available for Orthologs for LINC00587 Gene

Paralogs for LINC00587 Gene

No data available for Paralogs for LINC00587 Gene

Variants for LINC00587 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00587 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00587 Gene

Variant ID Type Subtype PubMed ID
esv22528 CNV gain 19812545
esv3305969 CNV mobile element insertion 20981092
esv3376424 CNV insertion 20981092
esv3573324 CNV loss 25503493
esv3573325 CNV loss 25503493
esv3621282 CNV loss 21293372
esv3621283 CNV loss 21293372
esv3621284 CNV loss 21293372
esv3621286 CNV loss 21293372
esv3621287 CNV loss 21293372
nsv1035562 CNV loss 25217958
nsv1037741 CNV loss 25217958
nsv1040886 CNV loss 25217958
nsv1042225 CNV loss 25217958
nsv1055040 CNV loss 25217958
nsv1141017 CNV deletion 24896259
nsv436686 OTHER inversion 17901297
nsv436716 OTHER inversion 17901297
nsv615027 CNV gain 21841781
nsv615031 CNV loss 21841781
nsv615032 CNV loss 21841781

Additional Variant Information for LINC00587 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00587
Leiden Open Variation Database (LOVD)
LINC00587

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00587 Gene

Disorders for LINC00587 Gene

Additional Disease Information for LINC00587

No disorders were found for LINC00587 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00587 Gene

Publications for LINC00587 Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray SJ … Dunham I (Nature 2004) 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  4. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3

Products for LINC00587 Gene

Sources for LINC00587 Gene