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Aliases for LINC00582 Gene

Subcategory (RNA class) for LINC00582 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00582 Gene

  • Long Intergenic Non-Protein Coding RNA 582 2 3 5

External Ids for LINC00582 Gene

Previous GeneCards Identifiers for LINC00582 Gene

  • GC01M231729

Summaries for LINC00582 Gene

GeneCards Summary for LINC00582 Gene

LINC00582 (Long Intergenic Non-Protein Coding RNA 582) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC00582 include Endometrial Cancer.

Additional gene information for LINC00582 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00582 Gene

Genomics for LINC00582 Gene

GeneHancer (GH) Regulatory Elements for LINC00582 Gene

Promoters and enhancers for LINC00582 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J231611 Enhancer 0.9 Ensembl ENCODE 650.7 -1.0 -1049 2.5 PKNOX1 MAX ZNF2 POLR2A EED ATF7 ETV6 IKZF2 RUNX3 CBFB LINC00582 DISC1 GC01P231616 TSNAX-DISC1
GH01J231333 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.4 +274.6 274641 7.3 HDGF PKNOX1 SMAD1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 SPRTN PIR33664 EXOC8 SNRPD2P2 RN7SL837P RPS24P4 LINC01737 C1orf131 LINC00582 EGLN1
GH01J231387 Enhancer 1.1 Ensembl ENCODE dbSUPER 10.1 +223.8 223755 1.3 MEIS2 PKNOX1 JUN INSM2 CEBPG FEZF1 HIC1 GATA3 ZNF366 FOSL2 EGLN1 LINC00582 DISC1 SPRTN PIR59803
GH01J231693 Promoter/Enhancer 1 EPDnew Ensembl ENCODE 10.7 -82.2 -82170 2.3 NR2F2 DISC1 GC01P231693 RNU5A-5P LINC00582 ENSG00000274121 TSNAX-DISC1
GH01J231635 Enhancer 0.9 Ensembl ENCODE 11.4 -24.3 -24312 1.2 TFAP4 SAP130 ZBTB21 JUN KLF17 ZEB1 HIC1 FOSL1 ZNF366 PATZ1 LINC00582 RNU5A-5P DISC1 TSNAX-DISC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00582 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00582 Gene

Genomic Locations for LINC00582 Gene
chr1:231,591,292-231,612,090
(GRCh38/hg38)
Size:
20,799 bases
Orientation:
Minus strand
chr1:231,727,038-231,747,836
(GRCh37/hg19)
Size:
20,799 bases
Orientation:
Minus strand

Genomic View for LINC00582 Gene

Genes around LINC00582 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00582 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00582 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00582 Gene

Proteins for LINC00582 Gene

Post-translational modifications for LINC00582 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00582 Gene

Domains & Families for LINC00582 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00582 Gene

Function for LINC00582 Gene

Phenotypes From GWAS Catalog for LINC00582 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00582 Gene

Localization for LINC00582 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00582 Gene

Pathways & Interactions for LINC00582 Gene

SuperPathways for LINC00582 Gene

No Data Available

Interacting Proteins for LINC00582 Gene

Gene Ontology (GO) - Biological Process for LINC00582 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00582 Gene

Drugs & Compounds for LINC00582 Gene

No Compound Related Data Available

Transcripts for LINC00582 Gene

mRNA/cDNA for LINC00582 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for LINC00582 Gene

Long intergenic non-protein coding RNA 582:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00582 Gene

No ASD Table

Relevant External Links for LINC00582 Gene

GeneLoc Exon Structure for
LINC00582
ECgene alternative splicing isoforms for
LINC00582

Expression for LINC00582 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00582 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00582 Gene

This gene is overexpressed in Spleen (x8.2), Minor Salivary Gland (x5.8), Colon - Transverse (x4.7), and Small Intestine - Terminal Ileum (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of LINC00582 Gene:

LINC00582

SOURCE GeneReport for Unigene cluster for LINC00582 Gene:

Hs.25555
genes like me logo Genes that share expression patterns with LINC00582: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00582 Gene

Orthologs for LINC00582 Gene

Evolution for LINC00582 Gene

ENSEMBL:
Gene Tree for LINC00582 (if available)
TreeFam:
Gene Tree for LINC00582 (if available)

No data available for Orthologs for LINC00582 Gene

Paralogs for LINC00582 Gene

No data available for Paralogs for LINC00582 Gene

Variants for LINC00582 Gene

Sequence variations from dbSNP and Humsavar for LINC00582 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000063040 -- 231,612,040(-) G/C non_coding_transcript_variant
rs1000103449 -- 231,593,889(-) A/G intron_variant
rs1000166717 -- 231,592,394(-) T/C/G intron_variant
rs1000178367 -- 231,611,916(-) T/C intron_variant
rs1000261394 -- 231,605,708(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00582 Gene

Variant ID Type Subtype PubMed ID
dgv153e212 CNV gain 25503493
dgv582n100 CNV gain 25217958
dgv849n54 CNV gain 21841781
esv2656516 CNV deletion 23128226
esv2759004 CNV gain 17122850
esv2763669 CNV gain 21179565
esv3589116 CNV gain 21293372
nsv468338 CNV gain 19166990
nsv4821 CNV insertion 18451855
nsv516935 CNV gain 19592680
nsv8902 CNV gain 18304495
nsv999063 CNV gain 25217958

Additional Variant Information for LINC00582 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00582

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00582 Gene

Disorders for LINC00582 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00582 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
endometrial cancer
  • endometrial cancer, familial
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00582

genes like me logo Genes that share disorders with LINC00582: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00582 Gene

Publications for LINC00582 Gene

No publications were found for LINC00582 Gene.

Products for LINC00582 Gene

Sources for LINC00582 Gene

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