Aliases for LINC00575 Gene

Subcategory (RNA class) for LINC00575 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00575 Gene

  • Long Intergenic Non-Protein Coding RNA 575 2 3 5
  • LINC00575 2 5 165
  • C4orf11 3 4
  • Putative Uncharacterized Protein Encoded By LINC00575 4
  • Chromosome 4 Open Reading Frame 11 2
  • NONHSAG038324.2 91
  • HSALNG0035535 164

External Ids for LINC00575 Gene

Previous HGNC Symbols for LINC00575 Gene

  • C4orf11

Previous GeneCards Identifiers for LINC00575 Gene

  • GC04M083535

Summaries for LINC00575 Gene

GeneCards Summary for LINC00575 Gene

LINC00575 (Long Intergenic Non-Protein Coding RNA 575) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00575 include Malignant Hemangioma and Chromosome 4Q21 Deletion Syndrome.

Additional gene information for LINC00575 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00575 Gene

Genomics for LINC00575 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00575 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J082620 Enhancer 0.4 Ensembl 600.7 +1.4 1409 0.4 RCOR1 CHD2 GATA2 LINC00575 TMEM150C ENSG00000286490 SCD5
GH04J082621 Enhancer 0.3 Ensembl 600.7 +0.6 609 0.8 EZH2 LINC00575 TMEM150C ENSG00000286490 SCD5
GH04J082618 Enhancer 0.5 Ensembl 0.7 +3.0 3010 0.4 OSR2 RCOR1 JUND FEZF1 CHD2 GATA2 POLR2A TMEM150C MIR575 LINC00575 ENSG00000286490 SCD5
GH04J082626 Enhancer 0.3 Ensembl 0.7 -4.8 -4791 0.4 PRDM10 TMEM150C SCD5 GPAT3 LINC00575 lnc-TMEM150C-6
GH04J082630 Enhancer 0.3 Ensembl 0.4 -8.5 -8491 0.6 FOXA2 MIR575 SCD5 LINC00575 lnc-TMEM150C-6 TMEM150C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00575 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00575 Gene

Genomic Locations for LINC00575 Gene
chr4:82,610,974-82,621,610
(GRCh38/hg38)
Size:
10,637 bases
Orientation:
Minus strand
chr4:83,534,266-83,542,590
(GRCh37/hg19)
Size:
8,325 bases
Orientation:
Minus strand

Genomic View for LINC00575 Gene

Genes around LINC00575 on UCSC Golden Path with GeneCards custom track
LINC00575 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00575 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00575 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00575 Gene

Proteins for LINC00575 Gene

  • Protein details for LINC00575 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6W349-CD011_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00575
    Protein Accession:
    Q6W349

    Protein attributes for LINC00575 Gene

    Size:
    94 amino acids
    Molecular mass:
    10157 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00575 Gene

Post-translational modifications for LINC00575 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00575 Gene

Domains & Families for LINC00575 Gene

Gene Families for LINC00575 Gene

Protein Domains for LINC00575 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC00575: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00575 Gene

Function for LINC00575 Gene

Phenotypes From GWAS Catalog for LINC00575 Gene

Phenotypes for LINC00575 Gene

GenomeRNAi human phenotypes for LINC00575:
genes like me logo Genes that share phenotypes with LINC00575: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00575

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00575 Gene

Localization for LINC00575 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00575 Gene

Pathways & Interactions for LINC00575 Gene

PathCards logo

SuperPathways for LINC00575 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00575 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00575 Gene

Drugs & Compounds for LINC00575 Gene

No Compound Related Data Available

Transcripts for LINC00575 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00575 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000556605_9606 lncRNA 910 6

HGNC: 21342,

RefSeq: NR_024087,

Ensembl: ENST00000426551 (view in UCSC) ,

LncBook: HSALNT0074370,

LNCipedia: LINC00575:2,

NONCODE: NONHSAT097169.2,

URS00003E78F8_9606 lncRNA 848 5

RefSeq: NR_024088,

Ensembl: ENST00000515811 (view in UCSC) ,

LncBook: HSALNT0074371,

LNCipedia: LINC00575:3,

NONCODE: NONHSAT097170.2,

URS0000E60CBF_9606 lncRNA 1055 1

Ensembl: ENST00000651054 (view in UCSC) ,

URS00008BD5A5_9606 lncRNA 268 3

LncBook: HSALNT0074373,

LNCipedia: LINC00575:5,

NONCODE: NONHSAT097171.2,

URS00009BBDB8_9606 lncRNA 910 2

LncBook: HSALNT0074372,

NONCODE: NONHSAT200142.1,

LINC00575 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00575 Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00575

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00575 Gene

No ASD Table

Relevant External Links for LINC00575 Gene

GeneLoc Exon Structure for
LINC00575

Expression for LINC00575 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00575 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00575 Gene

This gene is overexpressed in Testis (x20.1) and Brain - Anterior cingulate cortex (BA24) (x5.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00575

SOURCE GeneReport for Unigene cluster for LINC00575 Gene:

Hs.457189

mRNA Expression by UniProt/SwissProt for LINC00575 Gene:

Q6W349-CD011_HUMAN
Tissue specificity: Specifically expressed in retina and retinal pigment epithelium.
genes like me logo Genes that share expression patterns with LINC00575: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00575 Gene

Orthologs for LINC00575 Gene

Evolution for LINC00575 Gene

ENSEMBL:
Gene Tree for LINC00575 (if available)
TreeFam:
Gene Tree for LINC00575 (if available)

No data available for Orthologs for LINC00575 Gene

Paralogs for LINC00575 Gene

No data available for Paralogs for LINC00575 Gene

Variants for LINC00575 Gene

Additional dbSNP identifiers (rs#s) for LINC00575 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00575 Gene

Variant ID Type Subtype PubMed ID
nsv594744 CNV gain 21841781
nsv829989 CNV loss 17160897

Additional Variant Information for LINC00575 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00575

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00575 Gene

Disorders for LINC00575 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC00575 Gene - From: DISEASES

Disorder Aliases PubMed IDs
malignant hemangioma
chromosome 4q21 deletion syndrome
  • 4q21 microdeletion syndrome
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LINC00575: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00575 Gene

Publications for LINC00575 Gene

  1. Identifying differentially expressed genes in the mammalian retina and the retinal pigment epithelium by suppression subtractive hybridization. (PMID: 15218245) Schulz HL … Weber BH (Cytogenetic and genome research 2004) 2 3 4

Products for LINC00575 Gene

Sources for LINC00575 Gene