Aliases for LINC00563 Gene

Subcategory (RNA class) for LINC00563 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LINC00563 Gene

  • Long Intergenic Non-Protein Coding RNA 563 2 3 5
  • LINC00563 2 168
  • NONHSAG013443 92

External Ids for LINC00563 Gene

Previous GeneCards Identifiers for LINC00563 Gene

  • GC13U900908
  • GC13M046871

Summaries for LINC00563 Gene

GeneCards Summary for LINC00563 Gene

LINC00563 (Long Intergenic Non-Protein Coding RNA 563) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00563 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00563 Gene

Genomics for LINC00563 Gene

GeneHancer (GH) Regulatory Elements for LINC00563 Gene

Promoters and enhancers for LINC00563 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J046293 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +2.1 2087 4.7 CTBP1 NR2F2 ZNF316 MAFF USF1 GABPA TRIM24 CEBPG MAX CEBPB LCP1 LINC01198 RUBCNL ZC3H13 LINC00563 lnc-LRRC63-2 ENSG00000287863 LOC105370194 lnc-RUBCNL-4
GH13J046320 Enhancer 0.8 ENCODE dbSUPER 0.4 -23.5 -23472 1.7 CTCF REST RAD21 TRIM22 SMC3 RELA PBX2 SPI1 ZNF654 PAX5 LOC105370194 lnc-RUBCNL-4 RNU2-6P LINC01198 LINC00563
GH13J046316 Enhancer 0.6 Ensembl dbSUPER 0.4 -19.0 -18956 1.6 CTCF ZBTB17 GTF2A2 CEBPG RAD21 HDAC8 RNU2-6P lnc-RUBCNL-4 LOC105370194 LINC00563
GH13J046303 Enhancer 0.4 ENCODE dbSUPER 0.4 -6.4 -6387 1.1 SPI1 RNU2-6P LINC00563 LOC105370194 lnc-RUBCNL-4
GH13J046312 Enhancer 0.5 ENCODE dbSUPER 0.4 -15.8 -15786 1.5 SPI1 PRDM1 RNU2-6P LOC105370194 lnc-RUBCNL-4 LINC00563
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00563 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00563 Gene

Genomic Locations for LINC00563 Gene
chr13:46,296,445-46,297,844
(GRCh38/hg38)
Size:
1,400 bases
Orientation:
Minus strand
chr13:46,870,580-46,871,979
(GRCh37/hg19)
Size:
1,400 bases
Orientation:
Minus strand

Genomic View for LINC00563 Gene

Genes around LINC00563 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00563 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00563 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00563 Gene

Proteins for LINC00563 Gene

Post-translational modifications for LINC00563 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00563 Gene

Domains & Families for LINC00563 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00563 Gene

Function for LINC00563 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00563 Gene

Localization for LINC00563 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00563 Gene

Pathways & Interactions for LINC00563 Gene

PathCards logo

SuperPathways for LINC00563 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00563 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00563 Gene

Drugs & Compounds for LINC00563 Gene

No Compound Related Data Available

Transcripts for LINC00563 Gene

mRNA/cDNA for LINC00563 Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00563 Gene

No ASD Table

Relevant External Links for LINC00563 Gene

GeneLoc Exon Structure for
LINC00563

Expression for LINC00563 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00563 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00563 Gene

This gene is overexpressed in Liver (x16.1), Whole Blood (x11.9), Testis (x6.6), and Spleen (x6.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00563

SOURCE GeneReport for Unigene cluster for LINC00563 Gene:

Hs.90866
genes like me logo Genes that share expression patterns with LINC00563: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00563 Gene

Orthologs for LINC00563 Gene

Evolution for LINC00563 Gene

ENSEMBL:
Gene Tree for LINC00563 (if available)
TreeFam:
Gene Tree for LINC00563 (if available)

No data available for Orthologs for LINC00563 Gene

Paralogs for LINC00563 Gene

No data available for Paralogs for LINC00563 Gene

Variants for LINC00563 Gene

Additional dbSNP identifiers (rs#s) for LINC00563 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00563 Gene

Variant ID Type Subtype PubMed ID
dgv223e201 CNV deletion 23290073
esv3631982 CNV loss 21293372
esv3631983 CNV loss 21293372
nsv455876 CNV gain 19166990
nsv561581 CNV gain 21841781

Additional Variant Information for LINC00563 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00563

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00563 Gene

Disorders for LINC00563 Gene

Additional Disease Information for LINC00563

No disorders were found for LINC00563 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00563 Gene

Publications for LINC00563 Gene

  1. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W … Gibbs RA (Genome research 1997) 3 54
  2. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B … Gibbs RA (Analytical biochemistry 1996) 3 54

Products for LINC00563 Gene

Sources for LINC00563 Gene