Aliases for LINC00548 Gene

Subcategory (RNA class) for LINC00548 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00548 Gene

  • Long Intergenic Non-Protein Coding RNA 548 2 3
  • Long Intergenic Non-Protein Coding RNA 598 5
  • NONHSAG013297.2 91
  • HSALNG0096529 164
  • HSALNG0096546 164
  • Lnc-FOXO1-2 165
  • LINC00598 5
  • LINC00548 2
  • FLJ42392 2

External Ids for LINC00548 Gene

Previous GeneCards Identifiers for LINC00548 Gene

  • GC13M040769
  • GC13M040194

Summaries for LINC00548 Gene

GeneCards Summary for LINC00548 Gene

LINC00548 (Long Intergenic Non-Protein Coding RNA 548) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00548 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00548 Gene

Genomics for LINC00548 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00548 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00548 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00548 Gene

Genomic Locations for LINC00548 Gene
chr13:40,079,106-40,535,807
(GRCh38/hg38)
Size:
456,702 bases
Orientation:
Minus strand
chr13:40,768,646-40,794,639
(GRCh37/hg19)
Size:
25,994 bases
Orientation:
Minus strand

Genomic View for LINC00548 Gene

Genes around LINC00548 on UCSC Golden Path with GeneCards custom track
LINC00548 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00548 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00548 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00548 Gene

Proteins for LINC00548 Gene

Post-translational modifications for LINC00548 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00548 Gene

Domains & Families for LINC00548 Gene

Gene Families for LINC00548 Gene

genes like me logo Genes that share domains with LINC00548: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00548 Gene

Function for LINC00548 Gene

Phenotypes From GWAS Catalog for LINC00548 Gene

Animal Model Products

CRISPR Products

miRNA for LINC00548 Gene

miRTarBase miRNAs that target LINC00548

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LINC00548 Gene

Localization for LINC00548 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00548 Gene

Pathways & Interactions for LINC00548 Gene

PathCards logo

SuperPathways for LINC00548 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00548 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00548 Gene

Drugs & Compounds for LINC00548 Gene

No Compound Related Data Available

Transcripts for LINC00548 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00548 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075AA30_9606 lncRNA 2551 5

HGNC: 43683,

RefSeq: NR_033877,

Ensembl: ENST00000617777 (view in UCSC) ,

LNCipedia: lnc-FOXO1-2:3,

NONCODE: NONHSAT033321.2,

URS0000220509_9606 lncRNA 702 4

Ensembl: ENST00000400430 (view in UCSC) ,

LncBook: HSALNT0200444,

LNCipedia: lnc-FOXO1-2:10,

NONCODE: NONHSAT033334.2,

URS000077B2F6_9606 lncRNA 483 4

Ensembl: ENST00000615137 (view in UCSC) ,

LncBook: HSALNT0200445,

LNCipedia: lnc-FOXO1-2:9,

NONCODE: NONHSAT166651.1,

URS0000775C71_9606 lncRNA 3541 3

Ensembl: ENST00000615947 (view in UCSC) ,

LncBook: HSALNT0200394,

LNCipedia: lnc-FOXO1-2:32,

URS000076BA1F_9606 lncRNA 2088 3

Ensembl: ENST00000616706 (view in UCSC) ,

LNCipedia: lnc-FOXO1-2:4,

NONCODE: NONHSAT033333.2,

LINC00548 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00548 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00548 Gene

No ASD Table

Relevant External Links for LINC00548 Gene

GeneLoc Exon Structure for
LINC00548

Expression for LINC00548 Gene

SOURCE GeneReport for Unigene cluster for LINC00548 Gene:

Hs.577960
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00548 Gene

Orthologs for LINC00548 Gene

Evolution for LINC00548 Gene

ENSEMBL:
Gene Tree for LINC00548 (if available)
TreeFam:
Gene Tree for LINC00548 (if available)

No data available for Orthologs for LINC00548 Gene

Paralogs for LINC00548 Gene

No data available for Paralogs for LINC00548 Gene

Variants for LINC00548 Gene

Additional dbSNP identifiers (rs#s) for LINC00548 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00548 Gene

Variant ID Type Subtype PubMed ID
dgv1633n100 CNV gain 25217958
esv21572 CNV loss 19812545
esv3385547 CNV duplication 20981092
esv3407434 CNV duplication 20981092
esv3446625 CNV insertion 20981092
nsv1071096 CNV deletion 25765185
nsv513386 CNV insertion 21212237
nsv561537 CNV loss 21841781

Additional Variant Information for LINC00548 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00548

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00548 Gene

Disorders for LINC00548 Gene

Additional Disease Information for LINC00548

No disorders were found for LINC00548 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00548 Gene

Publications for LINC00548 Gene

No publications were found for LINC00548 Gene.

Products for LINC00548 Gene

Sources for LINC00548 Gene