Aliases for LINC00538 Gene

Subcategory (RNA class) for LINC00538 Gene

lncRNA

Number of RNA Genes sources:

4 / 14

Aliases for LINC00538 Gene

  • Long Intergenic Non-Protein Coding RNA 538 2 3
  • PROX1 Upstream Transcript 2 3
  • NONHSAG004263 92
  • HSALNG0010465 167
  • Lnc-PROX1-41 168
  • LINC00538 2
  • PROX1UT 3
  • Yiya 3

External Ids for LINC00538 Gene

Previous GeneCards Identifiers for LINC00538 Gene

  • GC01U903314

Summaries for LINC00538 Gene

GeneCards Summary for LINC00538 Gene

LINC00538 (Long Intergenic Non-Protein Coding RNA 538) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00538 include Colorectal Cancer and Urethral Diverticulum.

Additional gene information for LINC00538 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00538 Gene

Genomics for LINC00538 Gene

GeneHancer (GH) Regulatory Elements for LINC00538 Gene

Promoters and enhancers for LINC00538 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J213892 Enhancer 0.4 UCNEbase 0.3 -32.3 -32335 0.4 NFE2 LINC00538 lnc-PROX1-3 PROX1-AS1
GH01J213905 Enhancer 0.3 Ensembl 0.4 -19.3 -19347 0.4 HNRNPL ZNF512 LINC00538 lnc-PROX1-3 PROX1-AS1
GH01J213869 Enhancer 0.3 Ensembl 0.2 -54.4 -54447 0.6 SCRT1 SCRT2 lnc-PROX1-3 LINC00538 PROX1-AS1
GH01J213852 Enhancer 0.3 Ensembl 0.2 -71.1 -71147 1.6 ZNF512 lnc-PROX1-3 LINC00538 LOC105372912 PROX1-AS1
GH01J213850 Enhancer 0.2 Ensembl 0.2 -72.8 -72847 0.2 lnc-PROX1-3 LINC00538 LOC105372912 PROX1-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00538 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00538 Gene

Genomic Locations for LINC00538 Gene
chr1:213,924,748-213,926,654
(GRCh38/hg38)
Size:
1,907 bases
Orientation:
Plus strand

Genomic View for LINC00538 Gene

Genes around LINC00538 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00538 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00538 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00538 Gene

Proteins for LINC00538 Gene

Post-translational modifications for LINC00538 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00538 Gene

Domains & Families for LINC00538 Gene

Gene Families for LINC00538 Gene

genes like me logo Genes that share domains with LINC00538: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00538 Gene

Function for LINC00538 Gene

Phenotypes From GWAS Catalog for LINC00538 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00538 Gene

Localization for LINC00538 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00538 Gene

Pathways & Interactions for LINC00538 Gene

PathCards logo

SuperPathways for LINC00538 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00538 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00538 Gene

Drugs & Compounds for LINC00538 Gene

No Compound Related Data Available

Transcripts for LINC00538 Gene

mRNA/cDNA for LINC00538 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 NONCODE transcripts :
1 ENA transcripts :
1 LncBook transcripts :
2 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00538 Gene

No ASD Table

Relevant External Links for LINC00538 Gene

GeneLoc Exon Structure for
LINC00538

Expression for LINC00538 Gene

SOURCE GeneReport for Unigene cluster for LINC00538 Gene:

Hs.742586
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00538 Gene

Orthologs for LINC00538 Gene

No data available for Orthologs and Evolution for LINC00538 Gene

Paralogs for LINC00538 Gene

No data available for Paralogs for LINC00538 Gene

Variants for LINC00538 Gene

Additional dbSNP identifiers (rs#s) for LINC00538 Gene

Additional Variant Information for LINC00538 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00538

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00538 Gene

Disorders for LINC00538 Gene

MalaCards: The human disease database

(3) MalaCards diseases for LINC00538 Gene - From: LncRNADisease and DISEASES

- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00538

genes like me logo Genes that share disorders with LINC00538: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00538 Gene

Publications for LINC00538 Gene

  1. Expression of Long Noncoding RNA YIYA Promotes Glycolysis in Breast Cancer. (PMID: 29967256) Xing Z … Lin C (Cancer research 2018) 2 3 54
  2. Characterization of a carcinogenesis-associated long non-coding RNA. (PMID: 22258142) Yang F … Du Q (RNA biology 2012) 2 3 54
  3. Long non-coding RNAs: novel prognostic biomarkers for liver metastases in patients with early stage colorectal cancer. (PMID: 27391432) Kong H … Zhu H (Oncotarget 2016) 3 54

Products for LINC00538 Gene

Sources for LINC00538 Gene