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Aliases for LINC00536 Gene

Subcategory (RNA class) for LINC00536 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00536 Gene

  • Long Intergenic Non-Protein Coding RNA 536 2 3 5

External Ids for LINC00536 Gene

Previous GeneCards Identifiers for LINC00536 Gene

  • GC08M116963

Summaries for LINC00536 Gene

GeneCards Summary for LINC00536 Gene

LINC00536 (Long Intergenic Non-Protein Coding RNA 536) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC00536 include Orthostatic Intolerance.

Additional gene information for LINC00536 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00536 Gene

Genomics for LINC00536 Gene

GeneHancer (GH) Regulatory Elements for LINC00536 Gene

Promoters and enhancers for LINC00536 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J116324 Enhancer 0.7 ENCODE 600.7 +0.0 21 0.2 MYC SP1 CTBP1 SMARCA5 YY1 ZNF217 HCFC1 DPF2 NFIB GATA3 LINC00536 GC08P116305
GH08J116294 Enhancer 0.2 ENCODE 5.5 +30.7 30671 0.6 LINC00536 GC08P116305 GC08M116001
GH08J116320 Enhancer 0.8 FANTOM5 Ensembl ENCODE 0.7 +3.0 2958 4.2 NFE2 LINC00536 GC08P116305
GH08J116350 Enhancer 0.8 FANTOM5 ENCODE 0.3 -26.4 -26367 2.8 NFIB CTBP1 FOS DPF2 FOXA1 JUND ZNF217 LINC00536 ENSG00000253672 LOC102723447
GH08J116300 Enhancer 0.6 Ensembl ENCODE 0.3 +23.9 23858 2 SP1 POU5F1 GC08P116305 LINC00536 GC08M116001
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00536 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00536 Gene

Genomic Locations for LINC00536 Gene
chr8:115,950,511-116,325,059
(GRCh38/hg38)
Size:
374,549 bases
Orientation:
Minus strand
chr8:116,962,736-117,337,297
(GRCh37/hg19)
Size:
374,562 bases
Orientation:
Minus strand

Genomic View for LINC00536 Gene

Genes around LINC00536 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00536 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00536 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00536 Gene

Proteins for LINC00536 Gene

Post-translational modifications for LINC00536 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00536 Gene

Domains & Families for LINC00536 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00536 Gene

Function for LINC00536 Gene

Phenotypes From GWAS Catalog for LINC00536 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00536 Gene

Localization for LINC00536 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00536 Gene

Pathways & Interactions for LINC00536 Gene

PathCards logo

SuperPathways for LINC00536 Gene

No Data Available

Interacting Proteins for LINC00536 Gene

Gene Ontology (GO) - Biological Process for LINC00536 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00536 Gene

Drugs & Compounds for LINC00536 Gene

No Compound Related Data Available

Transcripts for LINC00536 Gene

mRNA/cDNA for LINC00536 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Unigene Clusters for LINC00536 Gene

Long intergenic non-protein coding RNA 536:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00536 Gene

No ASD Table

Relevant External Links for LINC00536 Gene

GeneLoc Exon Structure for
LINC00536
ECgene alternative splicing isoforms for
LINC00536

Expression for LINC00536 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00536 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00536 Gene

This gene is overexpressed in Testis (x12.5), Minor Salivary Gland (x12.4), and Esophagus - Mucosa (x7.4).

NURSA nuclear receptor signaling pathways regulating expression of LINC00536 Gene:

LINC00536

SOURCE GeneReport for Unigene cluster for LINC00536 Gene:

Hs.552281
genes like me logo Genes that share expression patterns with LINC00536: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00536 Gene

Orthologs for LINC00536 Gene

Evolution for LINC00536 Gene

ENSEMBL:
Gene Tree for LINC00536 (if available)
TreeFam:
Gene Tree for LINC00536 (if available)

No data available for Orthologs for LINC00536 Gene

Paralogs for LINC00536 Gene

No data available for Paralogs for LINC00536 Gene

Variants for LINC00536 Gene

Sequence variations from dbSNP and Humsavar for LINC00536 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000004751 -- 116,211,243(-) A/G intron_variant
rs1000008679 -- 116,175,449(-) T/G intron_variant
rs1000019907 -- 115,954,780(-) T/C intron_variant
rs1000027264 -- 116,083,389(-) G/A/C intron_variant
rs1000029765 -- 116,127,247(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00536 Gene

Variant ID Type Subtype PubMed ID
esv1113625 CNV insertion 17803354
esv2498631 CNV deletion 19546169
esv2535323 CNV insertion 19546169
esv2658354 CNV deletion 23128226
esv2759637 CNV gain 17122850
esv2761463 CNV loss 21179565
esv2762765 CNV loss 21179565
esv3308912 CNV mobile element insertion 20981092
esv3353100 CNV insertion 20981092
esv3438392 CNV insertion 20981092
esv35019 CNV gain 17911159
esv3618525 CNV gain 21293372
esv3618528 CNV loss 21293372
esv3618530 CNV gain 21293372
esv3618532 CNV loss 21293372
esv3618533 CNV gain 21293372
esv3618534 CNV loss 21293372
esv3891467 CNV loss 25118596
nsv1117846 CNV deletion 24896259
nsv1124369 CNV deletion 24896259
nsv1132165 CNV deletion 24896259
nsv1143212 CNV tandem duplication 24896259
nsv527309 CNV gain 19592680
nsv824721 CNV gain 20364138
nsv831432 CNV gain 17160897
nsv831433 CNV loss 17160897

Additional Variant Information for LINC00536 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00536

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00536 Gene

Disorders for LINC00536 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00536 Gene - From: DISEASES

Disorder Aliases PubMed IDs
orthostatic intolerance
  • floppy mitral valve
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00536

genes like me logo Genes that share disorders with LINC00536: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00536 Gene

Publications for LINC00536 Gene

  1. A genome-wide association study identifies susceptibility loci for ossification of the posterior longitudinal ligament of the spine. (PMID: 25064007) Nakajima M … Ikegawa S (Nature genetics 2014) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC00536 Gene

Sources for LINC00536 Gene

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