Free for academic non-profit institutions. Other users need a Commercial license
Aliases for LINC00533 Gene
Subcategory (RNA class) for LINC00533 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LINC00533 Gene
External Ids for LINC00533 Gene
- HGNC: 18690
- Entrez Gene: 387055
- Ensembl: ENSG00000235570
Additional External Ids for LINC00533 Gene
- Ensembl:
Previous HGNC Symbols for LINC00533 Gene
- C6orf38
Previous GeneCards Identifiers for LINC00533 Gene
- GC06M028620
- GC06M028623
- GC06M028629
- GC06M028634
- GC06M028640
- GC06M028651
- GC06M028654
- GC06M028685
- GC06M028688
- GC06M028691
- GC06M028777
- GC06M028656
- GC06M028662
- GC06M028667
- GC06M028668
- GC06M028670
- GC06M028679
- GC06M028681
- GC06M028683
Summaries for LINC00533 Gene
GeneCards Summary for LINC00533 Gene
LINC00533 (Long Intergenic Non-Protein Coding RNA 533) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC00533 Gene
- Monarch Initiative
- Search for LINC00533 at DataMed
- Search for LINC00533 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00533 Gene
Genomics for LINC00533 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC00533 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH06J028657 | Promoter/Enhancer | 1.3 | ENCODE CraniofacialAtlas | 0.7 | -3.5 | -3507 | 2.4 | ARHGAP35 GATAD2A TEAD4 PRDM10 ZNF629 TFE3 IKZF1 NFKBIZ ZNF692 RCOR2 | TRA-AGC4-1 piR-36225-006 ZSCAN12 ZKSCAN8 ZSCAN23 ZNF603P ZKSCAN3 ZSCAN26 ZSCAN9 ZKSCAN4 | |
| GH06J028647 | Promoter/Enhancer | 1.7 | Ensembl ENCODE CraniofacialAtlas | 0.4 | +5.7 | 5744 | 2.1 | GATAD2A TEAD4 PRDM10 ZNF629 NFKBIZ ZNF692 RCOR2 PRDM1 RXRB PATZ1 | TRT-CGT3-1 ZSCAN12 ZSCAN23 ZKSCAN8 GPX5 SUMO2P1 ZBED9 LINC00533 ENSG00000287279 LOC105374996 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC00533 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC00533 Gene
Genomic Locations for LINC00533 Gene
- chr6:28,648,286-28,654,517
- (GRCh38/hg38)
- Size:
- 6,232 bases
- Orientation:
- Minus strand
- chr6:28,616,063-28,616,843
- (GRCh37/hg19)
- Size:
- 781 bases
- Orientation:
- Minus strand
Genomic View for LINC00533 Gene
Genes around LINC00533 on UCSC Golden Path with GeneCards custom track
LINC00533 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 6p22.1 by HGNC
- 6p22.1 by Entrez Gene
- 6p22.1 by Ensembl
LINC00533 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC00533 Gene
Proteins for LINC00533 Gene
Post-translational modifications for LINC00533 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC00533
- Origene Custom Protein Services for LINC00533
No data available for DME Specific Peptides for LINC00533 Gene
Domains & Families for LINC00533 Gene
Gene Families for LINC00533 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00533 Gene
Function for LINC00533 Gene
Phenotypes From GWAS Catalog for LINC00533 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for LINC00533 - Select products 50% OFF >
- * LINC00533 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for LINC00533
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for LINC00533 - Select products 50% OFF >
- * LINC00533 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00533 Gene
Localization for LINC00533 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00533 Gene
Transcripts for LINC00533 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00533 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000A7700A_9606 | lncRNA | 581 | 4 |
HGNC: 18690, RefSeq: NR_135285, LncBook: HSALNT0103331, LNCipedia: LINC00533:3, |
| URS0000389EFE_9606 | lncRNA | 537 | 4 |
Ensembl: ENST00000456103 (view in UCSC) , LncBook: HSALNT0103330, LNCipedia: LINC00533:2, NONCODE: NONHSAT108476.2, |
| URS00008C36FB_9606 | lncRNA | 581 | 2 |
Ensembl: ENST00000504412 (view in UCSC) , NONCODE: NONHSAT116494.2, |
| URS00008C0BB2_9606 | lncRNA | 298 | 2 |
Ensembl: ENST00000512141 (view in UCSC) , NONCODE: NONHSAT116495.2, |
| URS00008B72E1_9606 | lncRNA | 804 | 3 |
LncBook: HSALNT0103332, LNCipedia: LINC00533:1, NONCODE: NONHSAT108477.2, |
LINC00533 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for LINC00533 - Select products 50% OFF >
- * LINC00533 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for LINC00533
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for LINC00533 - Select products 50% OFF >
- * LINC00533 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
Relevant External Links for LINC00533 Gene
- GeneLoc Exon Structure for
- LINC00533
No data available for mRNA/cDNA for LINC00533 Gene
Expression for LINC00533 Gene
mRNA differential expression in normal tissues according to GTEx for LINC00533 Gene
This gene is overexpressed in Testis (x37.6) and Brain - Cerebellum (x4.2).
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00533 Gene
Orthologs for LINC00533 Gene
No data available for Orthologs for LINC00533 Gene
Paralogs for LINC00533 Gene
No data available for Paralogs for LINC00533 Gene
Variants for LINC00533 Gene
Additional Variant Information for LINC00533 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC00533
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00533 Gene
Disorders for LINC00533 Gene
Additional Disease Information for LINC00533
No disorders were found for LINC00533 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00533 Gene
Publications for LINC00533 Gene
No publications were found for LINC00533 Gene.
Products for LINC00533 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC00533
- Origene Custom Protein Services for LINC00533
- Browse OriGene Inhibitory RNA Products For LINC00533
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC00533
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC00533
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC00533
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC00533
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC00533
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC00533
Sources for LINC00533 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB