Aliases for LINC00533 Gene

Subcategory (RNA class) for LINC00533 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00533 Gene

  • Long Intergenic Non-Protein Coding RNA 533 2 3 5
  • LINC00533 2 5 165
  • C6orf39 2 3
  • Chromosome 6 Open Reading Frame 38 2
  • NONHSAG045624.2 91
  • NONHSAG043321.2 91
  • HSALNG0048990 164
  • BA373N24.1 2
  • C6orf38 3

External Ids for LINC00533 Gene

Additional External Ids for LINC00533 Gene

Previous HGNC Symbols for LINC00533 Gene

  • C6orf38

Previous GeneCards Identifiers for LINC00533 Gene

  • GC06M028620
  • GC06M028623
  • GC06M028629
  • GC06M028634
  • GC06M028640
  • GC06M028651
  • GC06M028654
  • GC06M028685
  • GC06M028688
  • GC06M028691
  • GC06M028777
  • GC06M028656
  • GC06M028662
  • GC06M028667
  • GC06M028668
  • GC06M028670
  • GC06M028679
  • GC06M028681
  • GC06M028683

Summaries for LINC00533 Gene

GeneCards Summary for LINC00533 Gene

LINC00533 (Long Intergenic Non-Protein Coding RNA 533) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00533 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00533 Gene

Genomics for LINC00533 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00533 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J028657 Promoter/Enhancer 1.3 ENCODE CraniofacialAtlas 0.7 -3.5 -3507 2.4 ARHGAP35 GATAD2A TEAD4 PRDM10 ZNF629 TFE3 IKZF1 NFKBIZ ZNF692 RCOR2 TRA-AGC4-1 piR-36225-006 ZSCAN12 ZKSCAN8 ZSCAN23 ZNF603P ZKSCAN3 ZSCAN26 ZSCAN9 ZKSCAN4
GH06J028647 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas 0.4 +5.7 5744 2.1 GATAD2A TEAD4 PRDM10 ZNF629 NFKBIZ ZNF692 RCOR2 PRDM1 RXRB PATZ1 TRT-CGT3-1 ZSCAN12 ZSCAN23 ZKSCAN8 GPX5 SUMO2P1 ZBED9 LINC00533 ENSG00000287279 LOC105374996
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00533 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00533 Gene

Genomic Locations for LINC00533 Gene
chr6:28,648,286-28,654,517
(GRCh38/hg38)
Size:
6,232 bases
Orientation:
Minus strand
chr6:28,616,063-28,616,843
(GRCh37/hg19)
Size:
781 bases
Orientation:
Minus strand

Genomic View for LINC00533 Gene

Genes around LINC00533 on UCSC Golden Path with GeneCards custom track
LINC00533 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00533 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00533 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00533 Gene

Proteins for LINC00533 Gene

Post-translational modifications for LINC00533 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00533 Gene

Domains & Families for LINC00533 Gene

Gene Families for LINC00533 Gene

genes like me logo Genes that share domains with LINC00533: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00533 Gene

Function for LINC00533 Gene

Phenotypes From GWAS Catalog for LINC00533 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00533 Gene

Localization for LINC00533 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00533 Gene

Pathways & Interactions for LINC00533 Gene

PathCards logo

SuperPathways for LINC00533 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00533 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00533 Gene

Drugs & Compounds for LINC00533 Gene

No Compound Related Data Available

Transcripts for LINC00533 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00533 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000A7700A_9606 lncRNA 581 4

HGNC: 18690,

RefSeq: NR_135285,

LncBook: HSALNT0103331,

LNCipedia: LINC00533:3,

URS0000389EFE_9606 lncRNA 537 4

Ensembl: ENST00000456103 (view in UCSC) ,

LncBook: HSALNT0103330,

LNCipedia: LINC00533:2,

NONCODE: NONHSAT108476.2,

URS00008C36FB_9606 lncRNA 581 2

Ensembl: ENST00000504412 (view in UCSC) ,

NONCODE: NONHSAT116494.2,

URS00008C0BB2_9606 lncRNA 298 2

Ensembl: ENST00000512141 (view in UCSC) ,

NONCODE: NONHSAT116495.2,

URS00008B72E1_9606 lncRNA 804 3

LncBook: HSALNT0103332,

LNCipedia: LINC00533:1,

NONCODE: NONHSAT108477.2,

LINC00533 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00533 Gene

No ASD Table

Relevant External Links for LINC00533 Gene

GeneLoc Exon Structure for
LINC00533

No data available for mRNA/cDNA for LINC00533 Gene

Expression for LINC00533 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00533 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00533 Gene

This gene is overexpressed in Testis (x37.6) and Brain - Cerebellum (x4.2).
genes like me logo Genes that share expression patterns with LINC00533: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00533 Gene

Orthologs for LINC00533 Gene

Evolution for LINC00533 Gene

ENSEMBL:
Gene Tree for LINC00533 (if available)
TreeFam:
Gene Tree for LINC00533 (if available)

No data available for Orthologs for LINC00533 Gene

Paralogs for LINC00533 Gene

No data available for Paralogs for LINC00533 Gene

Variants for LINC00533 Gene

Additional dbSNP identifiers (rs#s) for LINC00533 Gene

Additional Variant Information for LINC00533 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00533

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00533 Gene

Disorders for LINC00533 Gene

Additional Disease Information for LINC00533

No disorders were found for LINC00533 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00533 Gene

Publications for LINC00533 Gene

No publications were found for LINC00533 Gene.

Products for LINC00533 Gene

Sources for LINC00533 Gene