Aliases for LINC00529 Gene

Data sources for LINC00529 Gene:

RNA type for LINC00529 Gene

lncRNA

Aliases for LINC00529 Gene

External Ids for LINC00529 Gene

Previous HGNC Symbols for LINC00529 Gene

  • C8orf8

Previous GeneCards Identifiers for LINC00529 Gene

  • GC08M011106

Summaries for LINC00529 Gene

GeneCards Summary for LINC00529 Gene

LINC00529 (Long Intergenic Non-Protein Coding RNA 529) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00529 include Keratolytic Winter Erythema.

Additional gene information for LINC00529 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00529 Gene

Genomics for LINC00529 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00529 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J011283 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 -1.1 -1070 3.4 BCLAF1 SP1 ZNF207 MYC ZNF600 SIX5 ZNF580 POLR2A ZNF10 BRCA1 MTMR9 ENSG00000280273 LINC00529 FDFT1 LOC101929290 TDH-AS1 FAM90A2P FAM86B1 ENSG00000272505 RF00994-1047
GH08J010990 Enhancer 0.9 ENCODE 9.9 +293.7 293685 0.2 MXD4 REST KLF11 SIN3A DEK ETS1 ZFP64 HOMEZ MNT KMT2B MIR598 LINC00529 piR-41405-093 piR-60471 PINX1 XKR6
GH08J010972 Enhancer 0.8 ENCODE 9.9 +311.6 311575 0.1 IKZF1 ZNF600 JUND ZNF10 TAL1 ZNF316 NFE2 SMARCA4 BATF MAFG LINC00529 piR-60471 piR-41405-093 PINX1 XKR6
GH08J011071 Enhancer 0.6 Ensembl 9.9 +211.7 211730 1 ZIC2 ZNF341 KLF9 SP2 KLF16 PRDM10 GLIS1 SP7 PKNOX1 KLF1 piR-50437-610 ENSG00000269918 MIR598 LINC00529 FAM167A HSALNG0063410 XKR6 PINX1
GH08J011244 Enhancer 0.5 Ensembl 11.2 +39.5 39548 0.6 NFIC BHLHE40 NFE2 ETV1 MAX MEIS2 CEBPB PKNOX1 piR-30048-043 piR-57135-085 LINC00529 ENSG00000269918 MTMR9 XKR6 HSALNG0063424-002 TDH-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00529 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00529 Gene

Latest Assembly
chr8:11,247,264-11,284,031
(GRCh38/hg38)
Size:
36,768 bases
Orientation:
Minus strand

Previous Assembly
chr8:11,104,773-11,141,540
(GRCh37/hg19 by Entrez Gene)
Size:
36,768 bases
Orientation:
Minus strand

chr8:11,105,135-11,125,374
(GRCh37/hg19 by Ensembl)
Size:
20,240 bases
Orientation:
Minus strand

Alternative Locations (GRCh38/hg38)

  • chr8(PATCHES):2,062,820-2,099,605 (+)

Genomic View for LINC00529 Gene

Genes around LINC00529 on UCSC Golden Path with GeneCards custom track
LINC00529 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00529 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00529 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00529 Gene

Proteins for LINC00529 Gene

Post-translational modifications for LINC00529 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00529 Gene

Domains & Families for LINC00529 Gene

Gene Families for LINC00529 Gene

genes like me logo Genes that share domains with LINC00529: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00529 Gene

Function for LINC00529 Gene

Phenotypes From GWAS Catalog for LINC00529 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00529 Gene

Localization for LINC00529 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00529 Gene

Pathways & Interactions for LINC00529 Gene

PathCards logo

SuperPathways for LINC00529 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00529 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00529 Gene

Drugs & Compounds for LINC00529 Gene

No Compound Related Data Available

Transcripts for LINC00529 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00529 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000057F5F9_9606 lncRNA 241 3

Ensembl: ENST00000443854 (view in UCSC) ,

LNCipedia: LINC00529:1,

NONCODE: NONHSAT125043.2,

URS0002123255_9606 lncRNA 1084 1

RefSeq: NR_170283,

URS0001BF3923_9606 lncRNA 1588 1

LncBook: HSALNT0133059,

URS0001BF6443_9606 lncRNA 873 1

LncBook: HSALNT0133057,

URS0000EA451D_9606 lncRNA 243 1

LncBook: HSALNT0289336,

LINC00529 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00529 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00529 Gene

No ASD Table

Relevant External Links for LINC00529 Gene

GeneLoc Exon Structure for
LINC00529

Expression for LINC00529 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00529 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00529

SOURCE GeneReport for Unigene cluster for LINC00529 Gene:

Hs.404138
genes like me logo Genes that share expression patterns with LINC00529: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00529 Gene

Orthologs for LINC00529 Gene

Evolution for LINC00529 Gene

ENSEMBL:
Gene Tree for LINC00529 (if available)
TreeFam:
Gene Tree for LINC00529 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC00529

No data available for Orthologs for LINC00529 Gene

Paralogs for LINC00529 Gene

No data available for Paralogs for LINC00529 Gene

Variants for LINC00529 Gene

Additional Variant Information for LINC00529 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00529
Leiden Open Variation Database (LOVD)
LINC00529

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00529 Gene

Disorders for LINC00529 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00529 Gene - From: GCD

Disorder Aliases PubMed IDs
keratolytic winter erythema
  • kwe
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00529

genes like me logo Genes that share disorders with LINC00529: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00529 Gene

Publications for LINC00529 Gene

  1. Physical and transcriptional map of the critical region for keratolytic winter erythema (KWE) on chromosome 8p22-p23 between D8S550 and D8S1759. (PMID: 11896452) Appel S … Rosenthal A (European journal of human genetics : EJHG 2002) 2 3

Products for LINC00529 Gene

Sources for LINC00529 Gene