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Aliases for LINC00528 Gene
Subcategory (RNA class) for LINC00528 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LINC00528 Gene
External Ids for LINC00528 Gene
- HGNC: 26875
- Entrez Gene: 200298
- Ensembl: ENSG00000269220
- UniProtKB: Q8N1L1
Previous HGNC Symbols for LINC00528 Gene
- C22orf37
Previous GeneCards Identifiers for LINC00528 Gene
- GC22P018261
Summaries for LINC00528 Gene
GeneCards Summary for LINC00528 Gene
LINC00528 (Long Intergenic Non-Protein Coding RNA 528) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC00528 Gene
- HGNC(26875)
- Entrez Gene(200298)
- Ensembl(ENSG00000269220)
- UniProtKB(Q8N1L1)
- Open Targets Platform(ENSG00000269220)
- Monarch Initiative
- Search for LINC00528 at DataMed
- Search for LINC00528 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00528 Gene
Genomics for LINC00528 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC00528 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH22J017769 | Promoter/Enhancer | 2.6 | EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 600.7 | -0.5 | -471 | 10 | SP1 HNRNPL GATAD2A PRDM10 IKZF1 NFKBIZ POLR2A BACH1 ETV6 LARP7 | BID LINC00528 MICAL3 HDHD5 BCL2L13 CECR2 piR-39622-002 | |
| GH22J017784 | Promoter/Enhancer | 2 | VISTA Ensembl ENCODE CraniofacialAtlas dbSUPER | 7.7 | +12.1 | 12126 | 3.7 | CREB1 GATAD2A CTCF TFE3 LEF1 SOX13 IKZF1 KDM1A POLR2A BACH1 | LINC00528 BID piR-52134 lnc-BID-1 ENSG00000093100 MICAL3 | |
| GH22J017779 | Enhancer | 0.9 | ENCODE dbSUPER | 0.7 | +4.9 | 4927 | 0.2 | SP1 RELA ZIC2 TCF12 IKZF2 POLR2A TRIM22 ZNF341 PKNOX1 EED | BID LINC00528 piR-52134 MICAL3 | |
| GH22J017767 | Enhancer | 1 | ENCODE dbSUPER | 0.4 | -6.6 | -6617 | 1.2 | SP1 FOXA1 ZNF143 RELA IKZF2 TRIM22 PKNOX1 EED ARID3A DPF2 | BID piR-39622-002 LINC00528 BCL2L13 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC00528 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC00528 Gene
Genomic Locations for LINC00528 Gene
- chr22:17,774,613-17,780,136
- (GRCh38/hg38)
- Size:
- 5,524 bases
- Orientation:
- Plus strand
- chr22:18,260,056-18,262,247
- (GRCh37/hg19)
- Size:
- 2,192 bases
- Orientation:
- Plus strand
Genomic View for LINC00528 Gene
Genes around LINC00528 on UCSC Golden Path with GeneCards custom track
LINC00528 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 22q11.21 by HGNC
- 22q11.21 by Entrez Gene
- 22q11.21 by Ensembl
LINC00528 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC00528 Gene
Proteins for LINC00528 Gene
-
Protein details for LINC00528 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q8N1L1-CV037_HUMAN
- Recommended name:
- Putative uncharacterized protein encoded by LINC00528
- Protein Accession:
- Q8N1L1
Protein attributes for LINC00528 Gene
- Size:
- 170 amino acids
- Molecular mass:
- 18115 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for LINC00528 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC00528
- Origene Custom Protein Services for LINC00528
No data available for DME Specific Peptides for LINC00528 Gene
Domains & Families for LINC00528 Gene
Gene Families for LINC00528 Gene
Protein Domains for LINC00528 Gene
- ProtoNet:
No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00528 Gene
Function for LINC00528 Gene
Phenotypes From GWAS Catalog for LINC00528 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for LINC00528 - Select products 50% OFF >
- * LINC00528 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for LINC00528
miRNA Products
Inhibitory RNA Products
- Origene shrna and RNAi products in human, mouse, rat for LINC00528
- Browse OriGene Inhibitory RNA Products For LINC00528
Clone Products
- Applied Biological Materials (abm): Clones for LINC00528 - Select products 50% OFF >
- * LINC00528 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00528 Gene
Localization for LINC00528 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00528 Gene
Pathways & Interactions for LINC00528 Gene
No data available for Pathways by source and SIGNOR curated interactions for LINC00528 Gene
Transcripts for LINC00528 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00528 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075E032_9606 | lncRNA | 2192 | 4 |
HGNC: 26875, RefSeq: NR_103718, LNCipedia: LINC00528:13, NONCODE: NONHSAT191959.1, |
| URS0000445D80_9606 | lncRNA | 2160 | 2 |
Ensembl: ENST00000600723 (view in UCSC) , LNCipedia: LINC00528:14, LINC00528:15, |
| URS0000D5D32F_9606 | lncRNA | 1995 | 2 |
LncBook: HSALNT0275097, LNCipedia: LINC00528:16, |
| URS00008BC8D4_9606 | lncRNA | 1399 | 2 |
LNCipedia: LINC00528:12, NONCODE: NONHSAT083229.2, |
| URS00008B9AB6_9606 | lncRNA | 325 | 2 |
LNCipedia: LINC00528:17, NONCODE: NONHSAT083230.2, |
LINC00528 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC00528 Gene
- 3 NCBI additional mRNA sequence :
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for LINC00528 - Select products 50% OFF >
- * LINC00528 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for LINC00528
miRNA Products
Inhibitory RNA Products
- Origene shrna and RNAi products in human, mouse, rat for LINC00528
- Browse OriGene Inhibitory RNA Products For LINC00528
Clone Products
- Applied Biological Materials (abm): Clones for LINC00528 - Select products 50% OFF >
- * LINC00528 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
Relevant External Links for LINC00528 Gene
- GeneLoc Exon Structure for
- LINC00528
Expression for LINC00528 Gene
mRNA differential expression in normal tissues according to GTEx for LINC00528 Gene
This gene is overexpressed in Whole Blood (x20.3) and Spleen (x7.6).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00528
SOURCE GeneReport for Unigene cluster for LINC00528 Gene:
Hs.517397Primer Products
-
OriGene qPCR primer pairs for LINC00528
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00528 Gene
Orthologs for LINC00528 Gene
No data available for Orthologs for LINC00528 Gene
Paralogs for LINC00528 Gene
No data available for Paralogs for LINC00528 Gene
Variants for LINC00528 Gene
Additional Variant Information for LINC00528 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC00528
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00528 Gene
Disorders for LINC00528 Gene
Additional Disease Information for LINC00528
No disorders were found for LINC00528 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00528 Gene
Publications for LINC00528 Gene
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 2 3 4
- Probing nuclear pore complex architecture with proximity-dependent biotinylation. (PMID: 24927568) Kim DI … Roux KJ (Proceedings of the National Academy of Sciences of the United States of America 2014) 3
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
Products for LINC00528 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC00528
- Origene Custom Protein Services for LINC00528
- Origene shrna and RNAi products in human, mouse, rat for LINC00528
- Browse OriGene Inhibitory RNA Products For LINC00528
- OriGene qPCR primer pairs for LINC00528
- Browse CRISPR knockouts for LINC00528
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC00528
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- antibodies-online: Search results for available LINC00528 related products ranked by validation data
- antibodies-online: Search results for available LINC00528 related products ranked by validation data
- antibodies-online: Search results for available LINC00528 related products ranked by validation data
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC00528
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC00528
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC00528
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC00528
Sources for LINC00528 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB