Aliases for LINC00528 Gene

Subcategory (RNA class) for LINC00528 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00528 Gene

  • Long Intergenic Non-Protein Coding RNA 528 2 3 5
  • LINC00528 2 5 165
  • C22orf37 3 4
  • Putative Uncharacterized Protein Encoded By LINC00528 4
  • Chromosome 22 Open Reading Frame 37 2
  • NONHSAG033215.2 91
  • HSALNG0133923 164
  • FLJ40542 2

External Ids for LINC00528 Gene

Previous HGNC Symbols for LINC00528 Gene

  • C22orf37

Previous GeneCards Identifiers for LINC00528 Gene

  • GC22P018261

Summaries for LINC00528 Gene

GeneCards Summary for LINC00528 Gene

LINC00528 (Long Intergenic Non-Protein Coding RNA 528) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00528 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00528 Gene

Genomics for LINC00528 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00528 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J017769 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.5 -471 10 SP1 HNRNPL GATAD2A PRDM10 IKZF1 NFKBIZ POLR2A BACH1 ETV6 LARP7 BID LINC00528 MICAL3 HDHD5 BCL2L13 CECR2 piR-39622-002
GH22J017784 Promoter/Enhancer 2 VISTA Ensembl ENCODE CraniofacialAtlas dbSUPER 7.7 +12.1 12126 3.7 CREB1 GATAD2A CTCF TFE3 LEF1 SOX13 IKZF1 KDM1A POLR2A BACH1 LINC00528 BID piR-52134 lnc-BID-1 ENSG00000093100 MICAL3
GH22J017779 Enhancer 0.9 ENCODE dbSUPER 0.7 +4.9 4927 0.2 SP1 RELA ZIC2 TCF12 IKZF2 POLR2A TRIM22 ZNF341 PKNOX1 EED BID LINC00528 piR-52134 MICAL3
GH22J017767 Enhancer 1 ENCODE dbSUPER 0.4 -6.6 -6617 1.2 SP1 FOXA1 ZNF143 RELA IKZF2 TRIM22 PKNOX1 EED ARID3A DPF2 BID piR-39622-002 LINC00528 BCL2L13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00528 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00528 Gene

Genomic Locations for LINC00528 Gene
chr22:17,774,613-17,780,136
(GRCh38/hg38)
Size:
5,524 bases
Orientation:
Plus strand
chr22:18,260,056-18,262,247
(GRCh37/hg19)
Size:
2,192 bases
Orientation:
Plus strand

Genomic View for LINC00528 Gene

Genes around LINC00528 on UCSC Golden Path with GeneCards custom track
LINC00528 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00528 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00528 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00528 Gene

Proteins for LINC00528 Gene

  • Protein details for LINC00528 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N1L1-CV037_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00528
    Protein Accession:
    Q8N1L1

    Protein attributes for LINC00528 Gene

    Size:
    170 amino acids
    Molecular mass:
    18115 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00528 Gene

Post-translational modifications for LINC00528 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00528 Gene

Domains & Families for LINC00528 Gene

Gene Families for LINC00528 Gene

Protein Domains for LINC00528 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC00528: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00528 Gene

Function for LINC00528 Gene

Phenotypes From GWAS Catalog for LINC00528 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00528 Gene

Localization for LINC00528 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00528 Gene

Pathways & Interactions for LINC00528 Gene

PathCards logo

SuperPathways for LINC00528 Gene

No Data Available

Interacting Proteins for LINC00528 Gene

Selected Interacting proteins: Q8N1L1-CV037_HUMAN for LINC00528 Gene via IID

Symbol External ID(s) Details
NUP160

Gene Ontology (GO) - Biological Process for LINC00528 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00528 Gene

Drugs & Compounds for LINC00528 Gene

No Compound Related Data Available

Transcripts for LINC00528 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00528 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E032_9606 lncRNA 2192 4

HGNC: 26875,

RefSeq: NR_103718,

LNCipedia: LINC00528:13,

NONCODE: NONHSAT191959.1,

URS0000445D80_9606 lncRNA 2160 2

Ensembl: ENST00000600723 (view in UCSC) ,

LNCipedia: LINC00528:14, LINC00528:15,

URS0000D5D32F_9606 lncRNA 1995 2

LncBook: HSALNT0275097,

LNCipedia: LINC00528:16,

URS00008BC8D4_9606 lncRNA 1399 2

LNCipedia: LINC00528:12,

NONCODE: NONHSAT083229.2,

URS00008B9AB6_9606 lncRNA 325 2

LNCipedia: LINC00528:17,

NONCODE: NONHSAT083230.2,

LINC00528 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00528 Gene

3 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00528 Gene

No ASD Table

Relevant External Links for LINC00528 Gene

GeneLoc Exon Structure for
LINC00528

Expression for LINC00528 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00528 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00528 Gene

This gene is overexpressed in Whole Blood (x20.3) and Spleen (x7.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00528

SOURCE GeneReport for Unigene cluster for LINC00528 Gene:

Hs.517397
genes like me logo Genes that share expression patterns with LINC00528: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00528 Gene

Orthologs for LINC00528 Gene

Evolution for LINC00528 Gene

ENSEMBL:
Gene Tree for LINC00528 (if available)
TreeFam:
Gene Tree for LINC00528 (if available)

No data available for Orthologs for LINC00528 Gene

Paralogs for LINC00528 Gene

No data available for Paralogs for LINC00528 Gene

Variants for LINC00528 Gene

Additional dbSNP identifiers (rs#s) for LINC00528 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00528 Gene

Variant ID Type Subtype PubMed ID
esv3893428 CNV loss 25118596
nsv191363 CNV deletion 16902084
nsv428385 CNV gain+loss 18775914
nsv518202 CNV loss 19592680
nsv526826 CNV gain 19592680
nsv527393 CNV loss 19592680
nsv834119 CNV loss 17160897
nsv834120 CNV loss 17160897

Additional Variant Information for LINC00528 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00528

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00528 Gene

Disorders for LINC00528 Gene

No disorders were found for LINC00528 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00528 Gene

Publications for LINC00528 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 2 3 4
  2. Probing nuclear pore complex architecture with proximity-dependent biotinylation. (PMID: 24927568) Kim DI … Roux KJ (Proceedings of the National Academy of Sciences of the United States of America 2014) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for LINC00528 Gene

Sources for LINC00528 Gene