Aliases for LINC00526 Gene

Subcategory (RNA class) for LINC00526 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00526 Gene

  • Long Intergenic Non-Protein Coding RNA 526 2 3 5
  • LINC00526 2 5 165
  • C18orf18 3 4
  • HsT959 2 3
  • Putative Uncharacterized Protein Encoded By LINC00526 4
  • Chromosome 18 Open Reading Frame 18 2
  • NONHSAG023259.2 91
  • HSALNG0119752 164
  • MGC17515 2

External Ids for LINC00526 Gene

Previous HGNC Symbols for LINC00526 Gene

  • C18orf18

Summaries for LINC00526 Gene

GeneCards Summary for LINC00526 Gene

LINC00526 (Long Intergenic Non-Protein Coding RNA 526) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00526 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00526 Gene

Genomics for LINC00526 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00526 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00526 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00526 Gene

Genomic Locations for LINC00526 Gene
chr18:5,236,724-5,238,598
(GRCh38/hg38)
Size:
1,875 bases
Orientation:
Minus strand
chr18:5,236,723-5,238,597
(GRCh37/hg19)
Size:
1,875 bases
Orientation:
Minus strand

Genomic View for LINC00526 Gene

Genes around LINC00526 on UCSC Golden Path with GeneCards custom track
LINC00526 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00526 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00526 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00526 Gene

Proteins for LINC00526 Gene

  • Protein details for LINC00526 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96FQ7-CR018_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00526
    Protein Accession:
    Q96FQ7
    Secondary Accessions:
    • A8K9M8

    Protein attributes for LINC00526 Gene

    Size:
    95 amino acids
    Molecular mass:
    10201 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00526 Gene

Post-translational modifications for LINC00526 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for LINC00526 Gene

Domains & Families for LINC00526 Gene

Gene Families for LINC00526 Gene

Protein Domains for LINC00526 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC00526: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00526 Gene

Function for LINC00526 Gene

Gene Ontology (GO) - Molecular Function for LINC00526 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with LINC00526: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00526 Gene

Localization for LINC00526 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00526 Gene

Pathways & Interactions for LINC00526 Gene

PathCards logo

SuperPathways for LINC00526 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00526 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00526 Gene

Drugs & Compounds for LINC00526 Gene

No Compound Related Data Available

Transcripts for LINC00526 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00526 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000096DE6_9606 lncRNA 1875 3

Ensembl: ENST00000581067 (view in UCSC) ,

LNCipedia: LINC00526:1,

NONCODE: NONHSAT057059.2,

URS000075D6F3_9606 lncRNA 1306 2

HGNC: 28278,

RefSeq: NR_026849,

URS00008B314F_9606 lncRNA 1306 2

LncBook: HSALNT0247315,

LNCipedia: LINC00526:4,

URS0000EC0D39_9606 lncRNA 1307 1

LncBook: HSALNT0289044,

LINC00526 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00526 Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00526 Gene

No ASD Table

Relevant External Links for LINC00526 Gene

GeneLoc Exon Structure for
LINC00526

Expression for LINC00526 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00526

SOURCE GeneReport for Unigene cluster for LINC00526 Gene:

Hs.657197
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00526 Gene

Orthologs for LINC00526 Gene

Evolution for LINC00526 Gene

ENSEMBL:
Gene Tree for LINC00526 (if available)
TreeFam:
Gene Tree for LINC00526 (if available)

No data available for Orthologs for LINC00526 Gene

Paralogs for LINC00526 Gene

No data available for Paralogs for LINC00526 Gene

Variants for LINC00526 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC00526 Gene

SNP ID Clinical significance and condition Chr 18 pos Variation AA Info Type
rs7242964 - p.Pro16Ala

Additional dbSNP identifiers (rs#s) for LINC00526 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00526 Gene

Variant ID Type Subtype PubMed ID
dgv184n21 CNV gain 19592680
dgv3317n100 CNV gain 25217958
nsv1060440 CNV gain 25217958
nsv1066095 CNV gain 25217958

Additional Variant Information for LINC00526 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00526

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00526 Gene

Disorders for LINC00526 Gene

No disorders were found for LINC00526 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00526 Gene

Publications for LINC00526 Gene

  1. Long non-coding RNA LINC00526 represses glioma progression via forming a double negative feedback loop with AXL. (PMID: 31240814) Yan J … Zeng E (Journal of cellular and molecular medicine 2019) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3
  4. DNA sequence and analysis of human chromosome 18. (PMID: 16177791) Nusbaum C … Lander ES (Nature 2005) 4
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4

Products for LINC00526 Gene

Sources for LINC00526 Gene