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Aliases for LINC00523 Gene

Subcategory (RNA class) for LINC00523 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00523 Gene

  • Long Intergenic Non-Protein Coding RNA 523 2 3 5
  • C14orf70 3 4
  • Chromosome 14 Open Reading Frame 70 2

External Ids for LINC00523 Gene

Previous HGNC Symbols for LINC00523 Gene

  • C14orf70

Previous GeneCards Identifiers for LINC00523 Gene

  • GC14P101124
  • GC14P101129
  • GC14P101146
  • GC14P101190
  • GC14P101210
  • GC14P101791
  • GC14P102084
  • GC14P102319
  • GC14P102489
  • GC14P102664
  • GC14P102837
  • GC14P103009

Summaries for LINC00523 Gene

GeneCards Summary for LINC00523 Gene

LINC00523 (Long Intergenic Non-Protein Coding RNA 523) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00523 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00523 Gene

Genomics for LINC00523 Gene

GeneHancer (GH) Regulatory Elements for LINC00523 Gene

Promoters and enhancers for LINC00523 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J100691 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 5.7 +36.2 36167 4.1 FOXA2 MLX SIN3A ZNF48 ETS1 YY1 GLIS2 ZNF143 FOS SP5 DLK1 MIR493 MIR337 MIR127 MIR431 MIR433 MIR136 RTL1 LINC00523 LOC105370668
GH14J100657 Enhancer 1.4 Ensembl ENCODE dbSUPER 6.3 +7.3 7261 13.4 ATF1 FOXA2 ARID4B DMAP1 ZNF2 ZNF48 ZNF143 ATF7 FOS RXRA LOC105370667 DLK1 WARS WDR25 BEGAIN MEG9 MIR493 MIR337 MIR127 MIR431
GH14J100648 Enhancer 0.7 ENCODE 5.2 -8.0 -7990 1.2 ATF1 FOXA2 JUN FOSL1 ZNF335 ZFHX2 GATA3 HNF4G FOSL2 ZNF600 WDR25 DLK1 WARS LINC00523 PIR56329 ENSG00000258576
GH14J100653 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.7 -2.7 -2699 1.7 ZFP64 RAD21 EGR1 ZNF143 RUNX3 EGR2 RXRA REST KAT8 ZNF184 PIR56329 WARS WDR25 LINC00523
GH14J100672 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +16.0 15991 1 HDAC1 ELF3 FOXA2 MLX ARID4B RAD21 ZNF48 RARA ZNF335 TCF12 DLK1 LOC105370667 ENSG00000258717 LINC00523
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00523 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00523 Gene

Genomic Locations for LINC00523 Gene
chr14:100,657,250-100,676,069
(GRCh38/hg38)
Size:
18,820 bases
Orientation:
Plus strand
chr14:101,123,587-101,142,406
(GRCh37/hg19)
Size:
18,820 bases
Orientation:
Plus strand

Genomic View for LINC00523 Gene

Genes around LINC00523 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00523 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00523 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00523 Gene

Proteins for LINC00523 Gene

  • Protein details for LINC00523 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86TU6-CN070_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00523
    Protein Accession:
    Q86TU6
    Secondary Accessions:
    • A2RUP4

    Protein attributes for LINC00523 Gene

    Size:
    105 amino acids
    Molecular mass:
    12089 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00523 Gene

Post-translational modifications for LINC00523 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00523 Gene

Domains & Families for LINC00523 Gene

Protein Domains for LINC00523 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00523: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00523 Gene

Function for LINC00523 Gene

Phenotypes From GWAS Catalog for LINC00523 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00523

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00523 Gene

Localization for LINC00523 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00523 Gene

Pathways & Interactions for LINC00523 Gene

SuperPathways for LINC00523 Gene

No Data Available

Interacting Proteins for LINC00523 Gene

Gene Ontology (GO) - Biological Process for LINC00523 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00523 Gene

Drugs & Compounds for LINC00523 Gene

No Compound Related Data Available

Transcripts for LINC00523 Gene

mRNA/cDNA for LINC00523 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(6) RNA Central transcripts :

Unigene Clusters for LINC00523 Gene

Long intergenic non-protein coding RNA 523:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00523

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00523 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6a · 6b
SP1: - - -
SP2: - - - - - - -
SP3: - - - - - - - -
SP4: - - - - -
SP5:
SP6: -

Relevant External Links for LINC00523 Gene

GeneLoc Exon Structure for
LINC00523
ECgene alternative splicing isoforms for
LINC00523

Expression for LINC00523 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00523 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00523 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x20.2), Brain - Caudate (basal ganglia) (x10.3), Brain - Putamen (basal ganglia) (x9.6), and Testis (x6.2).

Protein differential expression in normal tissues from HIPED for LINC00523 Gene

This gene is overexpressed in Tlymphocyte (68.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for LINC00523 Gene



Protein tissue co-expression partners for LINC00523 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00523 Gene:

LINC00523

SOURCE GeneReport for Unigene cluster for LINC00523 Gene:

Hs.379802
genes like me logo Genes that share expression patterns with LINC00523: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00523 Gene

Orthologs for LINC00523 Gene

Evolution for LINC00523 Gene

ENSEMBL:
Gene Tree for LINC00523 (if available)
TreeFam:
Gene Tree for LINC00523 (if available)

No data available for Orthologs for LINC00523 Gene

Paralogs for LINC00523 Gene

No data available for Paralogs for LINC00523 Gene

Variants for LINC00523 Gene

Sequence variations from dbSNP and Humsavar for LINC00523 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000125699 -- 100,657,312(+) C/T non_coding_transcript_variant
rs1000206993 -- 100,664,794(+) C/A intron_variant
rs1000224765 -- 100,659,582(+) C/G intron_variant
rs1000278462 -- 100,662,375(+) C/T intron_variant
rs1000330500 -- 100,662,116(+) T/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00523 Gene

Variant ID Type Subtype PubMed ID
nsv974480 CNV duplication 23825009
nsv952240 CNV deletion 24416366
nsv525723 CNV loss 19592680
nsv521690 CNV loss 19592680
nsv1424 CNV insertion 18451855
nsv1047590 CNV gain 25217958
esv3635510 CNV gain 21293372
esv34023 CNV loss 18971310
esv2751158 CNV gain 17911159

Additional Variant Information for LINC00523 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00523

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00523 Gene

Disorders for LINC00523 Gene

Additional Disease Information for LINC00523

No disorders were found for LINC00523 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00523 Gene

Publications for LINC00523 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC00523 Gene

Sources for LINC00523 Gene

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