Aliases for LINC00515 Gene

Subcategory (RNA class) for LINC00515 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LINC00515 Gene

  • Long Intergenic Non-Protein Coding RNA 515 2 3
  • PRED21 2 3
  • Novel Transcript, Antisense To MRPL39 5
  • Chromosome 21 Open Reading Frame 71 2
  • NONHSAG032561.2 91
  • Lnc-MRPL39-1 165
  • AP000223.1 5
  • LINC00515 2
  • C21orf71 3

External Ids for LINC00515 Gene

Previous HGNC Symbols for LINC00515 Gene

  • C21orf71

Previous GeneCards Identifiers for LINC00515 Gene

  • GC21M026958

Summaries for LINC00515 Gene

GeneCards Summary for LINC00515 Gene

LINC00515 (Long Intergenic Non-Protein Coding RNA 515) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00515 include Ovarian Cancer.

Additional gene information for LINC00515 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00515 Gene

Genomics for LINC00515 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00515 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J025582 Enhancer 0.6 Ensembl 600.7 +0.1 126 1.6 POLR2A SMAD5 PKNOX1 RUNX3 BCLAF1 BCL11A STAT5A ATF2 NFATC1 YY1 LINC00515 MRPL39 MIR155HG LINC00158 lnc-MRPL39-2 lnc-JAM2-1 JAM2
GH21J025584 Enhancer 0.4 FANTOM5 600.7 -1.4 -1372 0.7 POLR2A RCOR1 STAT5A LINC00515 MRPL39 MIR155HG LINC00158 lnc-JAM2-1 JAM2
GH21J025834 Enhancer 0.2 Ensembl 5.5 -251.3 -251275 0.8 MRPL39 LINC00515 GABPA APP HSALNG0132394 HSALNG0132398 ATP5PF lnc-JAM2-1
GH21J025606 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 -24.2 -24174 3 SP1 HNRNPL GATAD2A CTCF PRDM10 ZNF629 TFE3 SIX5 NFKBIZ KDM1A MRPL39 JAM2 GABPA LINC00515 lnc-JAM2-1
GH21J025576 Enhancer 0.9 Ensembl dbSUPER 0.4 +5.3 5325 0.4 POLR2A SMAD5 FOXJ2 RUNX3 BCLAF1 CEBPZ OSR2 CBFB FOSL1 KLF8 MRPL39 GABPA RPL13AP7 LINC00158 lnc-MRPL39-2 LINC00515 lnc-JAM2-1 MIR155HG JAM2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00515 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00515 Gene

Genomic Locations for LINC00515 Gene
chr21:25,582,770-25,583,326
(GRCh38/hg38)
Size:
557 bases
Orientation:
Minus strand
chr21:26,955,082-26,955,638
(GRCh37/hg19)
Size:
557 bases
Orientation:
Minus strand

Genomic View for LINC00515 Gene

Genes around LINC00515 on UCSC Golden Path with GeneCards custom track
LINC00515 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00515 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00515 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00515 Gene

Proteins for LINC00515 Gene

Post-translational modifications for LINC00515 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00515 Gene

Domains & Families for LINC00515 Gene

Gene Families for LINC00515 Gene

genes like me logo Genes that share domains with LINC00515: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00515 Gene

Function for LINC00515 Gene

Phenotypes From GWAS Catalog for LINC00515 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00515 Gene

Localization for LINC00515 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00515 gene
Compartment Confidence
extracellular 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00515 Gene

Pathways & Interactions for LINC00515 Gene

PathCards logo

SuperPathways for LINC00515 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00515 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00515 Gene

Drugs & Compounds for LINC00515 Gene

No Compound Related Data Available

Transcripts for LINC00515 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00515 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005939EE_9606 lncRNA 557 3

Ensembl: ENST00000567517 (view in UCSC) ,

LNCipedia: lnc-MRPL39-1:1,

NONCODE: NONHSAT081504.2,

URS0000CCE13C_9606 lncRNA 450 2

HGNC: 16019,

RefSeq: NR_024092,

URS00008BE16D_9606 lncRNA 450 1

LNCipedia: lnc-MRPL39-1:2,

LINC00515 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00515 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00515 Gene

No ASD Table

Relevant External Links for LINC00515 Gene

GeneLoc Exon Structure for
LINC00515

Expression for LINC00515 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00515 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00515

SOURCE GeneReport for Unigene cluster for LINC00515 Gene:

Hs.384586
genes like me logo Genes that share expression patterns with LINC00515: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00515 Gene

Orthologs for LINC00515 Gene

Evolution for LINC00515 Gene

ENSEMBL:
Gene Tree for LINC00515 (if available)
TreeFam:
Gene Tree for LINC00515 (if available)

No data available for Orthologs for LINC00515 Gene

Paralogs for LINC00515 Gene

No data available for Paralogs for LINC00515 Gene

Variants for LINC00515 Gene

Additional dbSNP identifiers (rs#s) for LINC00515 Gene

Additional Variant Information for LINC00515 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00515

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00515 Gene

Disorders for LINC00515 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00515 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
ovarian cancer
  • ovarian cancer, somatic
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LINC00515: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00515 Gene

Publications for LINC00515 Gene

  1. Downregulation of LINC00515 in high-grade serous ovarian cancer and its relationship with platinum resistance. (PMID: 31140829) Ni MW … Zheng ZG (Biomarkers in medicine 2019) 2 3
  2. Knockdown of Linc00515 Inhibits Multiple Myeloma Autophagy and Chemoresistance by Upregulating miR-140-5p and Downregulating ATG14. (PMID: 30121664) Lu D … Xiao M (Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 2018) 3

Products for LINC00515 Gene

Sources for LINC00515 Gene