Aliases for LINC00514 Gene

Subcategory (RNA class) for LINC00514 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00514 Gene

  • Long Intergenic Non-Protein Coding RNA 514 2 3 5 13
  • LINC00514 2 5
  • NONHSAG018377.2 91
  • LA16c-380H5.1 3
  • HSALNG0109096 164
  • Lnc-CLDN9-20 165

External Ids for LINC00514 Gene

Previous GeneCards Identifiers for LINC00514 Gene

  • GC16P003048
  • GC16P003049
  • GC16P003050
  • GC16P003122
  • GC16P003148
  • GC16P002989

Summaries for LINC00514 Gene

GeneCards Summary for LINC00514 Gene

LINC00514 (Long Intergenic Non-Protein Coding RNA 514) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00514 include Retinitis Pigmentosa 13.

Additional gene information for LINC00514 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00514 Gene

Genomics for LINC00514 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00514 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J002987 Enhancer 0.8 ENCODE CraniofacialAtlas 600.7 -0.5 -453 1.2 PRDM10 ZNF692 ZIC2 PKNOX1 PATZ1 SP2 ZBTB48 ZNF423 ZFHX2 ZNF335 LINC00514 ENSG00000272079 FLYWCH1 ENSG00000274367 PKMYT1 CLDN9
GH16J002989 Enhancer 0.2 Ensembl 600.7 +0.8 845 0.2 LINC00514 ENSG00000272079 PKMYT1 lnc-PKMYT1-3 CLDN9
GH16J002984 Promoter/Enhancer 1.3 Ensembl ENCODE 0.7 -4.5 -4455 0.8 BRCA1 CTCF IKZF1 ZNF692 BACH1 JUND LARP7 PRDM1 ZNF143 RXRB PAQR4 ENSG00000274367 LINC00514 PKMYT1 CLDN9
GH16J002985 Enhancer 0.8 FANTOM5 ENCODE dbSUPER 0.7 -2.3 -2303 1.3 HNRNPL ZBTB33 PRDM10 ZKSCAN1 SRF PRDM2 PAQR4 ENSG00000274367 LINC00514 PKMYT1 CLDN9
GH16J002991 Enhancer 0.7 Ensembl ENCODE 0.7 +2.8 2845 2.6 USF1 KLF4 PCBP1 HIC1 ZNF366 MAZ ZNF398 USF2 NRF1 SREBF1 ENSG00000272079 LINC00514 lnc-PKMYT1-3 PKMYT1 CLDN9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00514 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00514 Gene

Genomic Locations for LINC00514 Gene
chr16:2,988,256-3,002,016
(GRCh38/hg38)
Size:
13,761 bases
Orientation:
Plus strand
chr16:3,038,962-3,044,510
(GRCh37/hg19)
Size:
5,549 bases
Orientation:
Plus strand

Genomic View for LINC00514 Gene

Genes around LINC00514 on UCSC Golden Path with GeneCards custom track
LINC00514 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00514 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00514 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00514 Gene

Proteins for LINC00514 Gene

  • Protein details for LINC00514 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0J9YXV3-A0A0J9YXV3_HUMAN
    Recommended name:
    Long intergenic non-protein coding RNA 514
    Protein Accession:
    A0A0J9YXV3

    Protein attributes for LINC00514 Gene

    Size:
    536 amino acids
    Molecular mass:
    54285 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00514 Gene

Post-translational modifications for LINC00514 Gene

No Post-translational modifications

Other Protein References for LINC00514 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for LINC00514 Gene

Domains & Families for LINC00514 Gene

Gene Families for LINC00514 Gene

Protein Domains for LINC00514 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC00514: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00514 Gene

Function for LINC00514 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00514 Gene

Localization for LINC00514 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00514 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00514 Gene

Pathways & Interactions for LINC00514 Gene

PathCards logo

SuperPathways for LINC00514 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00514 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00514 Gene

Drugs & Compounds for LINC00514 Gene

No Compound Related Data Available

Transcripts for LINC00514 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00514 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075DDC2_9606 lncRNA 3221 3

HGNC: 27549,

RefSeq: NR_033861,

NONCODE: NONHSAT147901.2,

URS00008B359F_9606 lncRNA 556 3

LncBook: HSALNT0226770,

LNCipedia: lnc-CLDN9-20:1,

NONCODE: NONHSAT147903.2,

URS000024817E_9606 lncRNA 3385 2

LncBook: HSALNT0226768,

NONCODE: NONHSAT147902.2,

URS000047A3C9_9606 lncRNA 491 2

LncBook: HSALNT0226780,

NONCODE: NONHSAT147906.2,

URS00008BAF58_9606 lncRNA 349 2

LncBook: HSALNT0226772,

NONCODE: NONHSAT147904.2,

LINC00514 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00514 Gene

2 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00514 Gene

No ASD Table

Relevant External Links for LINC00514 Gene

GeneLoc Exon Structure for
LINC00514

Expression for LINC00514 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00514 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00514 Gene

This gene is overexpressed in Whole Blood (x13.1), Brain - Cerebellum (x6.9), and Brain - Cerebellar Hemisphere (x6.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00514

SOURCE GeneReport for Unigene cluster for LINC00514 Gene:

Hs.620489
genes like me logo Genes that share expression patterns with LINC00514: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00514 Gene

Orthologs for LINC00514 Gene

Evolution for LINC00514 Gene

ENSEMBL:
Gene Tree for LINC00514 (if available)
TreeFam:
Gene Tree for LINC00514 (if available)

No data available for Orthologs for LINC00514 Gene

Paralogs for LINC00514 Gene

No data available for Paralogs for LINC00514 Gene

Variants for LINC00514 Gene

Additional dbSNP identifiers (rs#s) for LINC00514 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00514 Gene

Variant ID Type Subtype PubMed ID
nsv509588 CNV insertion 20534489
nsv510673 CNV deletion 20534489
nsv952906 CNV deletion 24416366

Additional Variant Information for LINC00514 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00514

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00514 Gene

Disorders for LINC00514 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00514 Gene - From: DISEASES

Disorder Aliases PubMed IDs
retinitis pigmentosa 13
  • rp13
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00514

genes like me logo Genes that share disorders with LINC00514: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00514 Gene

Publications for LINC00514 Gene

  1. The long noncoding RNA landscape of neuroendocrine prostate cancer and its clinical implications. (PMID: 29757368) Ramnarine VR … Collins CC (GigaScience 2018) 2 3
  2. Silencing of lncRNA LINC00514 inhibits the malignant behaviors of papillary thyroid cancer through miR-204-3p/CDC23 axis. (PMID: 30553447) Li X … Liu H (Biochemical and biophysical research communications 2019) 3
  3. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 13
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC00514 Gene

Sources for LINC00514 Gene