Aliases for LINC00511 Gene

Subcategory (RNA class) for LINC00511 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for LINC00511 Gene

  • Long Intergenic Non-Protein Coding RNA 511 2 3 5
  • Onco-LncRNA-12 2 3
  • LINC00511 2 5
  • Lung Cancer Associated LncRNA 5 3
  • NONHSAG022655.2 91
  • Lnc-SLC39A11-1 165
  • HSALNG0118547 164
  • HSALNG0118552 164
  • LCAL5 3

External Ids for LINC00511 Gene

Previous GeneCards Identifiers for LINC00511 Gene

  • GC17M070596
  • GC17M070319

Summaries for LINC00511 Gene

GeneCards Summary for LINC00511 Gene

LINC00511 (Long Intergenic Non-Protein Coding RNA 511) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00511 include Lung Cancer and Lung Cancer Susceptibility 3.

Additional gene information for LINC00511 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00511 Gene

Genomics for LINC00511 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00511 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00511 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00511 Gene

Genomic Locations for LINC00511 Gene
chr17:72,290,091-72,640,472
(GRCh38/hg38)
Size:
350,382 bases
Orientation:
Minus strand
chr17:70,319,264-70,636,611
(GRCh37/hg19)
Size:
317,348 bases
Orientation:
Minus strand

Genomic View for LINC00511 Gene

Genes around LINC00511 on UCSC Golden Path with GeneCards custom track
LINC00511 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00511 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00511 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00511 Gene

Proteins for LINC00511 Gene

Post-translational modifications for LINC00511 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00511 Gene

Domains & Families for LINC00511 Gene

Gene Families for LINC00511 Gene

genes like me logo Genes that share domains with LINC00511: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00511 Gene

Function for LINC00511 Gene

Phenotypes From GWAS Catalog for LINC00511 Gene

Phenotypes for LINC00511 Gene

genes like me logo Genes that share phenotypes with LINC00511: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00511 Gene

Localization for LINC00511 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00511 gene
Compartment Confidence
extracellular 1
cytoskeleton 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00511 Gene

Pathways & Interactions for LINC00511 Gene

PathCards logo

SuperPathways for LINC00511 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00511 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00511 Gene

Drugs & Compounds for LINC00511 Gene

No Compound Related Data Available

Transcripts for LINC00511 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00511 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001710A5_9606 lncRNA 2265 4

HGNC: 43564,

RefSeq: NR_033876,

LNCipedia: lnc-SLC39A11-1:1,

NONCODE: NONHSAT055705.2,

URS0000197E47_9606 lncRNA 1716 4

Ensembl: ENST00000453722 (view in UCSC) ,

LncBook: HSALNT0244890,

LNCipedia: lnc-SLC39A11-1:4, lnc-SLC39A11-1:42,

NONCODE: NONHSAT055684.2,

URS000059A4CF_9606 lncRNA 561 4

Ensembl: ENST00000580500 (view in UCSC) ,

LncBook: HSALNT0244904,

LNCipedia: lnc-SLC39A11-1:14,

NONCODE: NONHSAT055692.2,

URS000044BC52_9606 lncRNA 475 3

Ensembl: ENST00000580948 (view in UCSC) ,

LNCipedia: lnc-SLC39A11-1:21,

NONCODE: NONHSAT055694.2,

URS0000A5DDD8_9606 lncRNA 2527 2

Ensembl: ENST00000649350 (view in UCSC) ,

ENA: KR778900.1:1..2527:ncRNA,

LINC00511 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00511 Gene

1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00511 Gene

No ASD Table

Relevant External Links for LINC00511 Gene

GeneLoc Exon Structure for
LINC00511

Expression for LINC00511 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00511 Gene

SOURCE GeneReport for Unigene cluster for LINC00511 Gene:

Hs.447555
genes like me logo Genes that share expression patterns with LINC00511: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00511 Gene

Orthologs for LINC00511 Gene

Evolution for LINC00511 Gene

ENSEMBL:
Gene Tree for LINC00511 (if available)
TreeFam:
Gene Tree for LINC00511 (if available)

No data available for Orthologs for LINC00511 Gene

Paralogs for LINC00511 Gene

No data available for Paralogs for LINC00511 Gene

Variants for LINC00511 Gene

Additional dbSNP identifiers (rs#s) for LINC00511 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00511 Gene

Variant ID Type Subtype PubMed ID
nsv472936 CNV novel sequence insertion 20440878

Additional Variant Information for LINC00511 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00511

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00511 Gene

Disorders for LINC00511 Gene

MalaCards: The human disease database

(4) MalaCards diseases for LINC00511 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
lung cancer
  • adenocarcinoma of lung
lung cancer susceptibility 3
  • lncr3
breast cancer
  • breast lobular carcinoma
tongue squamous cell carcinoma
  • squamous cell carcinoma of tongue
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00511

genes like me logo Genes that share disorders with LINC00511: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00511 Gene

Publications for LINC00511 Gene

  1. Long Intergenic Noncoding RNA 00511 Acts as an Oncogene in Non-small-cell Lung Cancer by Binding to EZH2 and Suppressing p57. (PMID: 27845772) Sun CC … Li DJ (Molecular therapy. Nucleic acids 2016) 2 3
  2. Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function. (PMID: 25864709) Cabanski CR … Maher CA (RNA biology 2015) 2 3
  3. LINC00511 knockdown prevents cervical cancer cell proliferation and reduces resistance to paclitaxel. (PMID: 31180057) Mao BD … Meng QZ (Journal of biosciences 2019) 3
  4. LINC00511 interacts with miR-765 and modulates tongue squamous cell carcinoma progression by targeting LAMC2. (PMID: 29315846) Ding J … Yang S (Journal of oral pathology & medicine : official publication of the International Association of Oral Pathologists and the American Academy of Oral Pathology 2018) 3
  5. Linc00511 acts as a competing endogenous RNA to regulate VEGFA expression through sponging hsa-miR-29b-3p in pancreatic ductal adenocarcinoma. (PMID: 28984028) Zhao X … Rufu C (Journal of cellular and molecular medicine 2018) 3

Products for LINC00511 Gene

Sources for LINC00511 Gene