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Aliases for LINC00511 Gene

Subcategory (RNA class) for LINC00511 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00511 Gene

  • Long Intergenic Non-Protein Coding RNA 511 2 3 5
  • Lung Cancer Associated LncRNA 5 3
  • Onco-LncRNA-12 3
  • LCAL5 3

External Ids for LINC00511 Gene

Previous GeneCards Identifiers for LINC00511 Gene

  • GC17M070596
  • GC17M070319

Summaries for LINC00511 Gene

GeneCards Summary for LINC00511 Gene

LINC00511 (Long Intergenic Non-Protein Coding RNA 511) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC00511 include Lung Cancer and Lung Cancer Susceptibility 3.

Additional gene information for LINC00511 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00511 Gene

Genomics for LINC00511 Gene

GeneHancer (GH) Regulatory Elements for LINC00511 Gene

Promoters and enhancers for LINC00511 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J072639 Enhancer 0.4 ENCODE 650.7 -0.1 -69 1.8 ZNF687 ZFX ZNF592 LINC00511 LOC105371887 GC17M072638 SLC39A11
GH17J072385 Enhancer 1.1 ENCODE dbSUPER 5.9 +253.3 253295 2.5 FOXA2 MLX ARID4B FEZF1 ZNF121 KLF7 FOS NFKBIZ SP5 ZHX2 LINC00511 SOX9 ENSG00000263680 LINC02003
GH17J072381 Enhancer 1 ENCODE dbSUPER 5.9 +258.4 258356 1.2 KLF17 MZF1 FEZF1 ZNF121 GLIS2 ZNF366 ZSCAN5C SCRT2 ZNF362 ZBTB11 LINC00511 LINC02003 ENSG00000263680
GH17J072337 Enhancer 1.1 Ensembl ENCODE 5.2 +301.1 301113 3.1 FOXA2 ZFP64 ARID4B FEZF1 ZNF48 ETS1 ATF7 FOS ZHX2 TSHZ1 LINC00511 GC17P072345 SOX9-AS1
GH17J072390 Enhancer 1.2 Ensembl ENCODE dbSUPER 4.7 +247.6 247615 5 FOXA2 BATF IRF4 THRB RARA ZSCAN5C FOS RUNX3 EGR2 REST LINC00511 SOX9 ENSG00000263680 LINC02003
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00511 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00511 Gene

Genomic Locations for LINC00511 Gene
chr17:72,323,123-72,640,472
(GRCh38/hg38)
Size:
317,350 bases
Orientation:
Minus strand
chr17:70,319,264-70,636,611
(GRCh37/hg19)
Size:
317,348 bases
Orientation:
Minus strand

Genomic View for LINC00511 Gene

Genes around LINC00511 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00511 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00511 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00511 Gene

Proteins for LINC00511 Gene

Post-translational modifications for LINC00511 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00511 Gene

Domains & Families for LINC00511 Gene

Gene Families for LINC00511 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00511: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00511 Gene

Function for LINC00511 Gene

Phenotypes From GWAS Catalog for LINC00511 Gene

Phenotypes for LINC00511 Gene

genes like me logo Genes that share phenotypes with LINC00511: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00511 Gene

Localization for LINC00511 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00511 Gene

Pathways & Interactions for LINC00511 Gene

SuperPathways for LINC00511 Gene

No Data Available

Interacting Proteins for LINC00511 Gene

Gene Ontology (GO) - Biological Process for LINC00511 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00511 Gene

Drugs & Compounds for LINC00511 Gene

No Compound Related Data Available

Transcripts for LINC00511 Gene

mRNA/cDNA for LINC00511 Gene

(2) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(17) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(17) RNA Central transcripts :

Unigene Clusters for LINC00511 Gene

Long intergenic non-protein coding RNA 511:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00511 Gene

No ASD Table

Relevant External Links for LINC00511 Gene

GeneLoc Exon Structure for
LINC00511
ECgene alternative splicing isoforms for
LINC00511

Expression for LINC00511 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00511 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00511 Gene:

LINC00511

SOURCE GeneReport for Unigene cluster for LINC00511 Gene:

Hs.447555
genes like me logo Genes that share expression patterns with LINC00511: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00511 Gene

Orthologs for LINC00511 Gene

Evolution for LINC00511 Gene

ENSEMBL:
Gene Tree for LINC00511 (if available)
TreeFam:
Gene Tree for LINC00511 (if available)

No data available for Orthologs for LINC00511 Gene

Paralogs for LINC00511 Gene

No data available for Paralogs for LINC00511 Gene

Variants for LINC00511 Gene

Sequence variations from dbSNP and Humsavar for LINC00511 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000077219 -- 72,606,689(-) C/T intron_variant
rs1000103532 -- 72,635,995(-) T/A intron_variant
rs1000154143 -- 72,635,709(-) T/G intron_variant
rs1000283921 -- 72,631,018(-) C/A/T intron_variant
rs1000390796 -- 72,640,008(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00511 Gene

Variant ID Type Subtype PubMed ID
nsv472936 CNV novel sequence insertion 20440878

Additional Variant Information for LINC00511 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00511

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00511 Gene

Disorders for LINC00511 Gene

MalaCards: The human disease database

(3) MalaCards diseases for LINC00511 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
lung cancer
  • lung cancer, susceptibility to
lung cancer susceptibility 3
  • lncr3
breast cancer
  • breast cancer, familial
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00511

genes like me logo Genes that share disorders with LINC00511: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00511 Gene

Publications for LINC00511 Gene

  1. Long Intergenic Noncoding RNA 00511 Acts as an Oncogene in Non-small-cell Lung Cancer by Binding to EZH2 and Suppressing p57. (PMID: 27845772) Sun CC … Li DJ (Molecular therapy. Nucleic acids 2016) 2 3 58
  2. Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function. (PMID: 25864709) Cabanski CR … Maher CA (RNA biology 2015) 2 3 58
  3. Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans. (PMID: 23400010) Del-Aguila JL … Boerwinkle E (The pharmacogenomics journal 2014) 3 58
  4. Common variants in left/right asymmetry genes and pathways are associated with relative hand skill. (PMID: 24068947) Brandler WM … Paracchini S (PLoS genetics 2013) 3 58

Products for LINC00511 Gene

Sources for LINC00511 Gene

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