Aliases for LINC00508 Gene

Subcategory (RNA class) for LINC00508 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LINC00508 Gene

  • Long Intergenic Non-Protein Coding RNA 508 2 3 5
  • Lnc-SLC15A4-32 168
  • HSALNG0095028 167
  • LINC00508 2

External Ids for LINC00508 Gene

Previous GeneCards Identifiers for LINC00508 Gene

  • GC12M128426
  • GC12M127940

Summaries for LINC00508 Gene

GeneCards Summary for LINC00508 Gene

LINC00508 (Long Intergenic Non-Protein Coding RNA 508) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00508 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00508 Gene

Genomics for LINC00508 Gene

GeneHancer (GH) Regulatory Elements for LINC00508 Gene

Promoters and enhancers for LINC00508 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J127984 Enhancer 0.4 Ensembl ENCODE 500.7 -0.8 -827 1.4 NFATC3 LINC00508 piR-50129-050 AB372617-002
GH12J127956 Enhancer 0.3 Ensembl ENCODE 0.3 +26.5 26504 1.5 LINC00508 piR-38051-080 LINC00507
GH12J127902 Enhancer 0.5 Ensembl ENCODE 0.2 +80.4 80385 1 TEAD4 SP1 LINC00507 LINC02393 LINC00508
GH12J127928 Enhancer 0.3 Ensembl ENCODE 0.2 +55.1 55091 2 piR-38051-080 LINC00507 LINC00508
GH12J127893 Enhancer 0.4 Ensembl 0.2 +89.7 89690 0.8 CTCF RAD21 ZNF143 LINC02393 LINC00507 LINC00508
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00508 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00508 Gene

Genomic Locations for LINC00508 Gene
chr12:127,883,989-127,983,891
(GRCh38/hg38)
Size:
99,903 bases
Orientation:
Minus strand
chr12:128,425,140-128,434,705
(GRCh37/hg19)
Size:
9,566 bases
Orientation:
Minus strand

Genomic View for LINC00508 Gene

Genes around LINC00508 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00508 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00508 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00508 Gene

Proteins for LINC00508 Gene

Post-translational modifications for LINC00508 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00508 Gene

Domains & Families for LINC00508 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00508 Gene

Function for LINC00508 Gene

Phenotypes From GWAS Catalog for LINC00508 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00508 Gene

Localization for LINC00508 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00508 Gene

Pathways & Interactions for LINC00508 Gene

PathCards logo

SuperPathways for LINC00508 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00508 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00508 Gene

Drugs & Compounds for LINC00508 Gene

No Compound Related Data Available

Transcripts for LINC00508 Gene

mRNA/cDNA for LINC00508 Gene

4 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 LncBook transcripts :
2 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00508 Gene

No ASD Table

Relevant External Links for LINC00508 Gene

GeneLoc Exon Structure for
LINC00508

Expression for LINC00508 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00508 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00508

genes like me logo Genes that share expression patterns with LINC00508: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00508 Gene

Orthologs for LINC00508 Gene

Evolution for LINC00508 Gene

ENSEMBL:
Gene Tree for LINC00508 (if available)
TreeFam:
Gene Tree for LINC00508 (if available)

No data available for Orthologs for LINC00508 Gene

Paralogs for LINC00508 Gene

No data available for Paralogs for LINC00508 Gene

Variants for LINC00508 Gene

Additional dbSNP identifiers (rs#s) for LINC00508 Gene

Additional Variant Information for LINC00508 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00508

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00508 Gene

Disorders for LINC00508 Gene

Additional Disease Information for LINC00508

No disorders were found for LINC00508 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00508 Gene

Publications for LINC00508 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for LINC00508 Gene

Products for LINC00508 Gene

Sources for LINC00508 Gene