Aliases for LINC00507 Gene

Subcategory (RNA class) for LINC00507 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC00507 Gene

  • Long Intergenic Non-Protein Coding RNA 507 2 3 5
  • LINC00507 2 170
  • NONHSAG012719 94
  • HSALNG0095037 169

External Ids for LINC00507 Gene

Previous GeneCards Identifiers for LINC00507 Gene

  • GC12P128400

Summaries for LINC00507 Gene

GeneCards Summary for LINC00507 Gene

LINC00507 (Long Intergenic Non-Protein Coding RNA 507) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00507 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00507 Gene

Genomics for LINC00507 Gene

GeneHancer (GH) Regulatory Elements for LINC00507 Gene

Promoters and enhancers for LINC00507 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J127902 Enhancer 0.4 Ensembl ENCODE 0.4 -11.2 -11201 1 SP1 LINC00507 LINC02393 LINC00508
GH12J127928 Enhancer 0.3 Ensembl ENCODE 0.4 +14.1 14093 2 piR-38051-080 LINC00507 LINC00508
GH12J127893 Enhancer 0.4 Ensembl 0.3 -20.5 -20506 0.8 CTCF RAD21 ZNF143 LINC02393 LINC00507 LINC00508
GH12J127888 Enhancer 0.3 ENCODE 0.3 -25.7 -25658 1.2 ATF2 LINC02393 LINC00507 LINC00508
GH12J127956 Enhancer 0.3 Ensembl ENCODE 0.3 +42.7 42680 1.5 LINC00508 piR-38051-080 LINC00507
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00507 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00507 Gene

Genomic Locations for LINC00507 Gene
chr12:127,914,707-127,960,028
(GRCh38/hg38)
Size:
45,322 bases
Orientation:
Plus strand
chr12:128,399,917-128,436,097
(GRCh37/hg19)
Size:
36,181 bases
Orientation:
Plus strand

Genomic View for LINC00507 Gene

Genes around LINC00507 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00507 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00507 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00507 Gene

Proteins for LINC00507 Gene

Post-translational modifications for LINC00507 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00507 Gene

Domains & Families for LINC00507 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00507 Gene

Function for LINC00507 Gene

Phenotypes From GWAS Catalog for LINC00507 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00507 Gene

Localization for LINC00507 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00507 Gene

Pathways & Interactions for LINC00507 Gene

PathCards logo

SuperPathways for LINC00507 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00507 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00507 Gene

Drugs & Compounds for LINC00507 Gene

No Compound Related Data Available

Transcripts for LINC00507 Gene

mRNA/cDNA for LINC00507 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(26) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(12) RNACentral transcripts :
(7) LncBook transcripts :
(10) LNCipedia transcripts :
(9) NONCODE transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00507 Gene

No ASD Table

Relevant External Links for LINC00507 Gene

GeneLoc Exon Structure for
LINC00507
ECgene alternative splicing isoforms for
LINC00507

Expression for LINC00507 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00507 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00507 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x20.2), Brain - Cortex (x16.2), and Brain - Anterior cingulate cortex (BA24) (x11.1).

NURSA nuclear receptor signaling pathways regulating expression of LINC00507 Gene:

LINC00507

SOURCE GeneReport for Unigene cluster for LINC00507 Gene:

Hs.385496
genes like me logo Genes that share expression patterns with LINC00507: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00507 Gene

Orthologs for LINC00507 Gene

Evolution for LINC00507 Gene

ENSEMBL:
Gene Tree for LINC00507 (if available)
TreeFam:
Gene Tree for LINC00507 (if available)

No data available for Orthologs for LINC00507 Gene

Paralogs for LINC00507 Gene

No data available for Paralogs for LINC00507 Gene

Variants for LINC00507 Gene

Sequence variations from dbSNP and Humsavar for LINC00507 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000047139 -- 127,947,107(+) A/G intron_variant
rs1000110866 -- 127,918,195(+) T/C intron_variant
rs1000114705 -- 127,920,479(+) G/A intron_variant
rs1000136871 -- 127,917,060(+) G/A/C intron_variant
rs1000178906 -- 127,932,204(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00507 Gene

Variant ID Type Subtype PubMed ID
dgv1573n100 CNV gain 25217958
dgv525e212 CNV loss 25503493
esv2658732 CNV deletion 23128226
esv2678932 CNV deletion 23128226
esv3368927 CNV insertion 20981092
esv3408503 CNV insertion 20981092
esv3631127 CNV gain 21293372
esv3631129 CNV loss 21293372
esv3631130 CNV loss 21293372
nsv1160068 CNV duplication 26073780
nsv818934 CNV loss 17921354

Additional Variant Information for LINC00507 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00507

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00507 Gene

Disorders for LINC00507 Gene

Additional Disease Information for LINC00507

No disorders were found for LINC00507 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00507 Gene

Publications for LINC00507 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for LINC00507 Gene

Sources for LINC00507 Gene