Aliases for LINC00504 Gene

Data sources for LINC00504 Gene:

RNA type for LINC00504 Gene

lncRNA

Aliases for LINC00504 Gene

External Ids for LINC00504 Gene

Summaries for LINC00504 Gene

GeneCards Summary for LINC00504 Gene

LINC00504 (Long Intergenic Non-Protein Coding RNA 504) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00504 Gene

Genomics for LINC00504 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00504 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J014886 Promoter/Enhancer 0.9 EPDnew Ensembl 255.3 0.0 -21 4 YY1 CEBPB EP300 RFX5 MAFG MEIS2 FOS ATF3 CEBPG LINC00504 HSALNG0033036 CPEB2
GH04J015000 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 9.8 -115.9 -115921 7.4 BCLAF1 ZNF207 IKZF1 MYC ZNF600 POLR2A NFIC ZIC2 ZBTB10 YY1 CPEB2 CPEB2-DT C1QTNF7 LINC00504 C1QTNF7-AS1
GH04J015078 Enhancer 0.9 Ensembl ENCODE 9.8 -193.5 -193520 9.4 CEBPA ATF3 YY1 CEBPB EP300 FOXA2 RXRA RAD21 RFX5 ZNF585B CC2D2A LINC00504 CPEB2-DT CPEB2 LINC01085 HSALNG0033042 RN7SKP170 lnc-FBXL5-11 C1QTNF7 C1QTNF7-AS1
GH04J015042 Enhancer 0.6 Ensembl dbSUPER 9 -154.7 -154721 1.8 JUND CTCF RAD21 ATF3 FOS LINC00504 HSALNG0033041 HSALNG0033042 CPEB2 C1QTNF7 C1QTNF7-AS1
GH04J014984 Enhancer 0.5 Ensembl 11 -96.7 -96720 1.8 YY1 RXRA JUND HNF4A SP1 REST GABPA LINC00504 CPEB2-DT RF00994-718 CPEB2 lnc-FBXL5-12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00504 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00504 Gene

Latest Assembly
chr4:14,470,464-14,888,180
(GRCh38/hg38)
Size:
417,717 bases
Orientation:
Minus strand

Previous Assembly
chr4:14,472,089-14,889,793
(GRCh37/hg19 by Entrez Gene)
Size:
417,705 bases
Orientation:
Minus strand

chr4:14,472,089-14,889,793
(GRCh37/hg19 by Ensembl)
Size:
417,705 bases
Orientation:
Minus strand

Genomic View for LINC00504 Gene

Genes around LINC00504 on UCSC Golden Path with GeneCards custom track
LINC00504 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00504 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00504 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00504 Gene

Proteins for LINC00504 Gene

Post-translational modifications for LINC00504 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00504 Gene

Domains & Families for LINC00504 Gene

Gene Families for LINC00504 Gene

genes like me logo Genes that share domains with LINC00504: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00504 Gene

Function for LINC00504 Gene

Phenotypes From GWAS Catalog for LINC00504 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00504 Gene

Localization for LINC00504 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00504 Gene

Pathways & Interactions for LINC00504 Gene

PathCards logo

SuperPathways for LINC00504 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00504 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00504 Gene

Drugs & Compounds for LINC00504 Gene

No Compound Related Data Available

Transcripts for LINC00504 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00504 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00004657D9_9606 lncRNA 462 4

Ensembl: ENST00000506292 (view in UCSC) ,

LncBook: HSALNT0069471,

LNCipedia: LINC00504:7,

NONCODE: NONHSAT095606.2,

URS000054D0A9_9606 lncRNA 4679 3

RefSeq: NR_126435,

Ensembl: ENST00000505089 (view in UCSC) ,

LNCipedia: LINC00504:2,

URS00005B0C32_9606 lncRNA 987 2

Ensembl: ENST00000515031 (view in UCSC) ,

LNCipedia: LINC00504:4,

URS0000767575_9606 lncRNA 822 2

Ensembl: ENST00000509654 (view in UCSC) ,

LNCipedia: LINC00504:6,

URS00008B6509_9606 lncRNA 1274 2

LNCipedia: LINC00504:8,

NONCODE: NONHSAT095604.2,

LINC00504 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00504 Gene

6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00504 Gene

No ASD Table

Relevant External Links for LINC00504 Gene

GeneLoc Exon Structure for
LINC00504

Expression for LINC00504 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00504 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00504 Gene

This gene is overexpressed in Testis (x6.4), Skin - Sun Exposed (Lower leg) (x5.9), Skin - Not Sun Exposed (Suprapubic) (x5.7), and Breast - Mammary Tissue (x4.6).
genes like me logo Genes that share expression patterns with LINC00504: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00504 Gene

Orthologs for LINC00504 Gene

Evolution for LINC00504 Gene

ENSEMBL:
Gene Tree for LINC00504 (if available)
TreeFam:
Gene Tree for LINC00504 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC00504

No data available for Orthologs for LINC00504 Gene

Paralogs for LINC00504 Gene

No data available for Paralogs for LINC00504 Gene

Variants for LINC00504 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00504 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC00504 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00504
Leiden Open Variation Database (LOVD)
LINC00504

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00504 Gene

Disorders for LINC00504 Gene

Additional Disease Information for LINC00504

No disorders were found for LINC00504 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00504 Gene

Publications for LINC00504 Gene

  1. Upregulation of LINC00504 is associated with aggressive progression and poor prognosis in non-small cell lung cancer. (PMID: 32016971) Ma HP … Li XY (European review for medical and pharmacological sciences 2020) 3
  2. Long non-coding RNA LINC00504 regulates the Warburg effect in ovarian cancer through inhibition of miR-1244. (PMID: 31691157) Liu Y … Cao D (Molecular and cellular biochemistry 2020) 3
  3. A noncoding RNA LINC00504 interacts with c-Myc to regulate tumor metabolism in colon cancer. (PMID: 30998289) Feng J … Chen Y (Journal of cellular biochemistry 2019) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC00504 Gene

Sources for LINC00504 Gene