Aliases for LINC00502 Gene

Subcategory (RNA class) for LINC00502 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC00502 Gene

  • Long Intergenic Non-Protein Coding RNA 502 2 3 5
  • LINC00502 2 170
  • NONHSAG006516 94
  • HSALNG0079643 169

External Ids for LINC00502 Gene

Previous GeneCards Identifiers for LINC00502 Gene

  • GC10P092807

Summaries for LINC00502 Gene

GeneCards Summary for LINC00502 Gene

LINC00502 (Long Intergenic Non-Protein Coding RNA 502) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00502 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00502 Gene

Genomics for LINC00502 Gene

GeneHancer (GH) Regulatory Elements for LINC00502 Gene

Promoters and enhancers for LINC00502 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J091032 Enhancer 0.9 FANTOM5 Ensembl ENCODE 750.6 +1.7 1744 5 ZNF362 ZNF547 CREB1 POLR2A STAT1 NR2C2 GABPA HNF4A LINC00502 LOC105378430 RNU6-740P ANKRD1 ENSG00000225519 lnc-ANKRD1-2
GH10J090997 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -33.8 -33817 3.3 RELA MLLT1 ZNF687 CREM ZBED1 IKZF1 BACH1 IKZF2 PKNOX1 MNT ENSG00000273124 ANKRD1 RNU6-740P ENSG00000225519 LINC00502
GH10J091005 Enhancer 1.1 ENCODE dbSUPER 0.3 -26.1 -26119 2.8 ZNF24 SP1 CTCF CREB1 MIXL1 ZNF133 JUND CC2D1A ETV6 RELA RPP30 BTAF1 HECTD2 TNKS2 ENSG00000273124 ENSG00000225519 LINC00502
GH10J091021 Enhancer 0.7 Ensembl ENCODE CraniofacialAtlas 0.4 -9.8 -9781 3.6 PRDM10 SCRT2 ENSG00000225519 TNKS2-AS1 LINC00502 ENSG00000273124
GH10J091049 Enhancer 0.6 Ensembl ENCODE 0.4 +17.4 17444 3.6 HLF EZH2 IKZF1 CBFA2T3 DDX18P6 lnc-ANKRD1-2 LINC00502
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00502 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00502 Gene

Genomic Locations for LINC00502 Gene
chr10:91,033,157-91,062,164
(GRCh38/hg38)
Size:
29,008 bases
Orientation:
Plus strand
chr10:92,806,923-92,821,916
(GRCh37/hg19)
Size:
14,994 bases
Orientation:
Plus strand

Genomic View for LINC00502 Gene

Genes around LINC00502 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00502 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00502 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00502 Gene

Proteins for LINC00502 Gene

Post-translational modifications for LINC00502 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00502 Gene

Domains & Families for LINC00502 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00502 Gene

Function for LINC00502 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00502 Gene

Localization for LINC00502 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00502 Gene

Pathways & Interactions for LINC00502 Gene

PathCards logo

SuperPathways for LINC00502 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00502 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00502 Gene

Drugs & Compounds for LINC00502 Gene

No Compound Related Data Available

Transcripts for LINC00502 Gene

mRNA/cDNA for LINC00502 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNACentral transcripts :
(3) NONCODE transcripts :
(2) LNCipedia transcripts :
(1) LncBook transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00502 Gene

No ASD Table

Relevant External Links for LINC00502 Gene

GeneLoc Exon Structure for
LINC00502
ECgene alternative splicing isoforms for
LINC00502

Expression for LINC00502 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00502 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00502 Gene

This gene is overexpressed in Testis (x49.0) and Adrenal Gland (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of LINC00502 Gene:

LINC00502

SOURCE GeneReport for Unigene cluster for LINC00502 Gene:

Hs.512240
genes like me logo Genes that share expression patterns with LINC00502: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00502 Gene

Orthologs for LINC00502 Gene

Evolution for LINC00502 Gene

ENSEMBL:
Gene Tree for LINC00502 (if available)
TreeFam:
Gene Tree for LINC00502 (if available)

No data available for Orthologs for LINC00502 Gene

Paralogs for LINC00502 Gene

No data available for Paralogs for LINC00502 Gene

Variants for LINC00502 Gene

Sequence variations from dbSNP and Humsavar for LINC00502 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000282474 -- 91,047,211(+) C/T intron_variant
rs1000326364 -- 91,060,141(+) C/G intron_variant
rs1000389325 -- 91,053,403(+) C/T intron_variant
rs1000441745 -- 91,053,121(+) A/T intron_variant
rs1000696507 -- 91,046,846(+) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00502 Gene

Variant ID Type Subtype PubMed ID
esv2619018 CNV deletion 19546169
esv2658309 CNV deletion 23128226
esv2739485 CNV deletion 23290073
esv3546672 CNV deletion 23714750
nsv525712 CNV gain 19592680
nsv948133 CNV duplication 23825009

Additional Variant Information for LINC00502 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00502

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00502 Gene

Disorders for LINC00502 Gene

Additional Disease Information for LINC00502

No disorders were found for LINC00502 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00502 Gene

Publications for LINC00502 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56

Products for LINC00502 Gene

Sources for LINC00502 Gene