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Aliases for LINC00494 Gene
Subcategory (RNA class) for LINC00494 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LINC00494 Gene
External Ids for LINC00494 Gene
- HGNC: 27657
- Entrez Gene: 284749
- Ensembl: ENSG00000235621
Previous GeneCards Identifiers for LINC00494 Gene
- GC20P046985
Summaries for LINC00494 Gene
GeneCards Summary for LINC00494 Gene
LINC00494 (Long Intergenic Non-Protein Coding RNA 494) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC00494 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00494 Gene
Genomics for LINC00494 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC00494 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC00494 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC00494 Gene
Genomic Locations for LINC00494 Gene
- chr20:48,355,214-48,371,682
- (GRCh38/hg38)
- Size:
- 16,469 bases
- Orientation:
- Plus strand
- chr20:46,988,654-46,999,381
- (GRCh37/hg19)
- Size:
- 10,728 bases
- Orientation:
- Plus strand
Genomic View for LINC00494 Gene
Genes around LINC00494 on UCSC Golden Path with GeneCards custom track
LINC00494 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 20q13.13 by HGNC
- 20q13.13 by Entrez Gene
- 20q13.13 by Ensembl
LINC00494 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC00494 Gene
Proteins for LINC00494 Gene
Post-translational modifications for LINC00494 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC00494
- Origene Custom Protein Services for LINC00494
No data available for DME Specific Peptides for LINC00494 Gene
Domains & Families for LINC00494 Gene
Gene Families for LINC00494 Gene
Suggested Antigen Peptide Sequences for LINC00494 Gene
- GenScript: Design optimal peptide antigens:
-
- Hypothetical LOC284749 (A4QN14_HUMAN)
No data available for Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00494 Gene
Function for LINC00494 Gene
Phenotypes From GWAS Catalog for LINC00494 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for LINC00494 - Select products 50% OFF >
- * LINC00494 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for LINC00494
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for LINC00494 - Select products 50% OFF >
- * LINC00494 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00494 Gene
Localization for LINC00494 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00494 Gene
Transcripts for LINC00494 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00494 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075AAA5_9606 | lncRNA | 3592 | 2 |
HGNC: 27657, RefSeq: NR_026958, |
| URS00002DC68C_9606 | lncRNA | 3544 | 2 |
Ensembl: ENST00000416742 (view in UCSC) , LNCipedia: LINC00494:4, |
| URS0000A9CCEC_9606 | lncRNA | 3343 | 2 |
Ensembl: ENST00000545181 (view in UCSC) , LNCipedia: LINC00494:6, |
| URS000019FC1B_9606 | lncRNA | 3071 | 2 |
Ensembl: ENST00000433094 (view in UCSC) , LNCipedia: LINC00494:8, |
| URS0000EEFAF1_9606 | lncRNA | 3418 | 1 |
Ensembl: ENST00000655482 (view in UCSC) , |
LINC00494 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC00494 Gene
- 5 NCBI additional mRNA sequence :
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for LINC00494 - Select products 50% OFF >
- * LINC00494 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for LINC00494
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for LINC00494 - Select products 50% OFF >
- * LINC00494 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
Relevant External Links for LINC00494 Gene
- GeneLoc Exon Structure for
- LINC00494
Expression for LINC00494 Gene
mRNA differential expression in normal tissues according to GTEx for LINC00494 Gene
This gene is overexpressed in Testis (x12.9), Spleen (x10.7), Small Intestine - Terminal Ileum (x6.5), and Pituitary (x5.5).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00494
SOURCE GeneReport for Unigene cluster for LINC00494 Gene:
Hs.299080Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00494 Gene
Orthologs for LINC00494 Gene
No data available for Orthologs for LINC00494 Gene
Paralogs for LINC00494 Gene
No data available for Paralogs for LINC00494 Gene
Variants for LINC00494 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv2259n106 | OTHER | inversion | 24896259 |
| dgv4322n100 | CNV | loss | 25217958 |
| dgv792e199 | CNV | deletion | 23128226 |
| esv2722468 | CNV | deletion | 23290073 |
| esv2722476 | CNV | deletion | 23290073 |
| esv2763661 | CNV | gain | 21179565 |
| esv3589 | OTHER | complex | 18987735 |
| esv3645989 | CNV | gain | 21293372 |
| esv3645990 | CNV | gain | 21293372 |
| esv3893343 | CNV | gain | 25118596 |
| nsv1149619 | OTHER | inversion | 26484159 |
| nsv458999 | CNV | gain | 19166990 |
| nsv470553 | CNV | gain | 18288195 |
| nsv524004 | CNV | gain | 19592680 |
| nsv586157 | CNV | gain | 21841781 |
| nsv586165 | CNV | gain | 21841781 |
| nsv586167 | CNV | gain | 21841781 |
| nsv833997 | CNV | gain | 17160897 |
Additional Variant Information for LINC00494 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC00494
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00494 Gene
Disorders for LINC00494 Gene
Additional Disease Information for LINC00494
No disorders were found for LINC00494 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00494 Gene
Publications for LINC00494 Gene
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3
- p53-inducible long non-coding RNA PICART1 mediates cancer cell proliferation and migration. (PMID: 28339031) Cao Y … Cao D (International journal of oncology 2017) 3
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
Products for LINC00494 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC00494
- Origene Custom Protein Services for LINC00494
- Browse OriGene Inhibitory RNA Products For LINC00494
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC00494
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC00494
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- antibodies-online: Search results for available LINC00494 related products ranked by validation data
- antibodies-online: Search results for available LINC00494 related products ranked by validation data
- antibodies-online: Search results for available LINC00494 related products ranked by validation data
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC00494
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC00494
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC00494
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC00494
Sources for LINC00494 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB