LINC00494 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 494

GC20P048359
GIFtS:
16

Aliases for LINC00494 Gene

Subcategory (RNA class) for LINC00494 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC00494 Gene

  • Long Intergenic Non-Protein Coding RNA 494 2 3 5
  • LINC00494 2 170
  • NONHSAG031956 94
  • HSALNG0130609 169
  • HSALNG0130611 169

External Ids for LINC00494 Gene

Previous GeneCards Identifiers for LINC00494 Gene

  • GC20P046985

Summaries for LINC00494 Gene

GeneCards Summary for LINC00494 Gene

LINC00494 (Long Intergenic Non-Protein Coding RNA 494) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00494 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00494 Gene

Genomics for LINC00494 Gene

GeneHancer (GH) Regulatory Elements for LINC00494 Gene

Promoters and enhancers for LINC00494 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH20J048356 Enhancer 0.8 ENCODE 750.6 +1.5 1479 0.2 MLX RBPJ NR2F1 NR2F6 MIXL1 HLF ELF3 TFE3 CEBPG PPARG LINC00494 lnc-PREX1-6 ENSG00000286063
GH20J048372 Enhancer 1.3 ENCODE CraniofacialAtlas dbSUPER 15.4 +18.9 18944 3.4 CTCF SREBF1 LCORL MLX RBPJ NR2F1 NR2F6 MIXL1 MNT RERE LINC00494 SULF2 ENSG00000286063 ENSG00000236874
GH20J048359 Promoter/Enhancer 1.2 Ensembl ENCODE 14.4 +5.0 5000 1.8 NR2F1 MNT MTA3 RELA NKRF POLR2A TFE3 MLLT1 CREM HDGF lnc-PREX1-6 LINC00494 SULF2 ENSG00000286063
GH20J048338 Enhancer 1 Ensembl ENCODE 15.1 -15.9 -15898 1.9 E2F8 SP1 RELA NKRF ZNF687 CREM ZBED1 HDGF FOSL2 IKZF1 piR-38051-173 DDX27 LINC00494 ENSG00000229853 CSE1L NCOA3 lnc-ARFGEF2-4 ENSG00000286063
GH20J048395 Enhancer 1 Ensembl ENCODE 12 +40.2 40187 1.6 SREBF1 MLX RBPJ NR2F1 NR2F6 MIXL1 RERE ELF3 AHR SP5 LOC105372643 NCOA3 LINC00494 ENSG00000229853 HSALNG0130615
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00494 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00494 Gene

Genomic Locations for LINC00494 Gene
chr20:48,355,214-48,371,682
(GRCh38/hg38)
Size:
16,469 bases
Orientation:
Plus strand
chr20:46,988,654-46,999,381
(GRCh37/hg19)
Size:
10,728 bases
Orientation:
Plus strand

Genomic View for LINC00494 Gene

Genes around LINC00494 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00494 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00494 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC00494 Gene

Proteins for LINC00494 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC00494 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00494 Gene

Domains & Families for LINC00494 Gene

Suggested Antigen Peptide Sequences for LINC00494 Gene

GenScript: Design optimal peptide antigens:
  • Hypothetical LOC284749 (A4QN14_HUMAN)

No data available for Gene Families , Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00494 Gene

Function for LINC00494 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC00494 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00494 Gene

Localization for LINC00494 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00494 Gene

Pathways & Interactions for LINC00494 Gene

PathCards logo

SuperPathways for LINC00494 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00494 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00494 Gene

Drugs & Compounds for LINC00494 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC00494 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC00494 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(18) Selected AceView cDNA sequences:
(15) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(13) RNACentral transcripts :
(7) NONCODE transcripts :
(3) LncBook transcripts :
(10) LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00494 Gene

No ASD Table

Relevant External Links for LINC00494 Gene

GeneLoc Exon Structure for
LINC00494
ECgene alternative splicing isoforms for
LINC00494

Expression for LINC00494 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00494 Gene

mRNA expression in normal human tissues for LINC00494 Gene
mRNA expression by GTEx for LINC00494 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00494 Gene

This gene is overexpressed in Testis (x12.9), Spleen (x10.7), Small Intestine - Terminal Ileum (x6.5), and Pituitary (x5.5).

NURSA nuclear receptor signaling pathways regulating expression of LINC00494 Gene:

LINC00494

SOURCE GeneReport for Unigene cluster for LINC00494 Gene:

Hs.299080
genes like me logo Genes that share expression patterns with LINC00494: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00494 Gene

Orthologs for LINC00494 Gene

Evolution for LINC00494 Gene

ENSEMBL:
Gene Tree for LINC00494 (if available)
TreeFam:
Gene Tree for LINC00494 (if available)

No data available for Orthologs for LINC00494 Gene

Paralogs for LINC00494 Gene

No data available for Paralogs for LINC00494 Gene

Variants for LINC00494 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LINC00494 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000476834 -- 48,366,241(+) GGTGG/GG intron_variant
rs1000579719 -- 48,359,965(+) G/A non_coding_transcript_variant
rs1000736158 -- 48,360,899(+) G/A intron_variant
rs1000766266 -- 48,366,476(+) C/A non_coding_transcript_variant
rs1001406699 -- 48,358,682(+) G/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00494 Gene

Variant ID Type Subtype PubMed ID
dgv2259n106 OTHER inversion 24896259
dgv4322n100 CNV loss 25217958
dgv792e199 CNV deletion 23128226
esv2722468 CNV deletion 23290073
esv2722476 CNV deletion 23290073
esv2763661 CNV gain 21179565
esv3589 OTHER complex 18987735
esv3645989 CNV gain 21293372
esv3645990 CNV gain 21293372
esv3893343 CNV gain 25118596
nsv1149619 OTHER inversion 26484159
nsv458999 CNV gain 19166990
nsv470553 CNV gain 18288195
nsv524004 CNV gain 19592680
nsv586157 CNV gain 21841781
nsv586165 CNV gain 21841781
nsv586167 CNV gain 21841781
nsv833997 CNV gain 17160897

Additional Variant Information for LINC00494 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00494

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00494 Gene

Disorders for LINC00494 Gene

Additional Disease Information for LINC00494

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC00494 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00494 Gene

Publications for LINC00494 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 56
  2. p53-inducible long non-coding RNA PICART1 mediates cancer cell proliferation and migration. (PMID: 28339031) Cao Y … Cao D (International journal of oncology 2017) 3 56
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56

ExternalLinks

View latest publications for LINC00494 gene in Mastermind

Products for LINC00494 Gene

Sources for LINC00494 Gene