Aliases for LINC00489 Gene

Subcategory (RNA class) for LINC00489 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00489 Gene

  • Long Intergenic Non-Protein Coding RNA 489 2 3 5
  • LINC00489 2 5 165
  • NONHSAG031734.2 91
  • HSALNG0129916 164

External Ids for LINC00489 Gene

Previous GeneCards Identifiers for LINC00489 Gene

  • GC20M036248

Summaries for LINC00489 Gene

GeneCards Summary for LINC00489 Gene

LINC00489 (Long Intergenic Non-Protein Coding RNA 489) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00489 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00489 Gene

Genomics for LINC00489 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00489 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J037651 Enhancer 0.7 ENCODE 0.3 -29.0 -28955 0.2 CTCF RXRB REST RAD21 IRF2 ZBTB26 ZKSCAN8 ZNF316 MAFF YY1 HSALNG0129918 LINC00489 CTNNBL1 BLCAP
GH20J037661 Enhancer 0.2 Ensembl 0.3 -39.1 -39082 0.8 CTNNBL1 VSTM2L RPRD1B TTI1 HSALNG0129918 LINC00489 BLCAP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00489 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00489 Gene

Genomic Locations for LINC00489 Gene
chr20:37,619,298-37,623,119
(GRCh38/hg38)
Size:
3,822 bases
Orientation:
Minus strand
chr20:36,247,700-36,251,521
(GRCh37/hg19)
Size:
3,822 bases
Orientation:
Minus strand

Genomic View for LINC00489 Gene

Genes around LINC00489 on UCSC Golden Path with GeneCards custom track
LINC00489 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00489 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00489 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00489 Gene

Proteins for LINC00489 Gene

Post-translational modifications for LINC00489 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00489 Gene

Domains & Families for LINC00489 Gene

Gene Families for LINC00489 Gene

genes like me logo Genes that share domains with LINC00489: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00489 Gene

Function for LINC00489 Gene

Phenotypes From GWAS Catalog for LINC00489 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00489 Gene

Localization for LINC00489 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00489 Gene

Pathways & Interactions for LINC00489 Gene

PathCards logo

SuperPathways for LINC00489 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00489 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00489 Gene

Drugs & Compounds for LINC00489 Gene

No Compound Related Data Available

Transcripts for LINC00489 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00489 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001310A4_9606 lncRNA 543 4

Ensembl: ENST00000457816 (view in UCSC) ,

LncBook: HSALNT0266865,

LNCipedia: LINC00489:1,

NONCODE: NONHSAT079630.2,

URS000075AB21_9606 lncRNA 543 2

HGNC: 43426,

RefSeq: NR_047461,

LINC00489 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00489 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00489 Gene

No ASD Table

Relevant External Links for LINC00489 Gene

GeneLoc Exon Structure for
LINC00489

Expression for LINC00489 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00489 Gene

SOURCE GeneReport for Unigene cluster for LINC00489 Gene:

Hs.580680
genes like me logo Genes that share expression patterns with LINC00489: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00489 Gene

Orthologs for LINC00489 Gene

Evolution for LINC00489 Gene

ENSEMBL:
Gene Tree for LINC00489 (if available)
TreeFam:
Gene Tree for LINC00489 (if available)

No data available for Orthologs for LINC00489 Gene

Paralogs for LINC00489 Gene

No data available for Paralogs for LINC00489 Gene

Variants for LINC00489 Gene

Additional dbSNP identifiers (rs#s) for LINC00489 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00489 Gene

Variant ID Type Subtype PubMed ID
esv2762072 CNV loss 21179565
nsv1055206 CNV loss 25217958
nsv585962 CNV loss 21841781

Additional Variant Information for LINC00489 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00489

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00489 Gene

Disorders for LINC00489 Gene

Additional Disease Information for LINC00489

No disorders were found for LINC00489 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00489 Gene

Publications for LINC00489 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for LINC00489 Gene

Sources for LINC00489 Gene