Aliases for LINC00482 Gene

Subcategory (RNA class) for LINC00482 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LINC00482 Gene

  • Long Intergenic Non-Protein Coding RNA 482 2 3 5
  • LINC00482 2 168
  • C17orf55 3 4
  • Putative Uncharacterized Protein Encoded By LINC00482 4
  • Chromosome 17 Open Reading Frame 55 2
  • NONHSAG022989 92

External Ids for LINC00482 Gene

Previous HGNC Symbols for LINC00482 Gene

  • C17orf55

Previous GeneCards Identifiers for LINC00482 Gene

  • GC17M079278

Summaries for LINC00482 Gene

GeneCards Summary for LINC00482 Gene

LINC00482 (Long Intergenic Non-Protein Coding RNA 482) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00482 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00482 Gene

Genomics for LINC00482 Gene

GeneHancer (GH) Regulatory Elements for LINC00482 Gene

Promoters and enhancers for LINC00482 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00482 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00482 Gene

Genomic Locations for LINC00482 Gene
chr17:81,299,220-81,309,250
(GRCh38/hg38)
Size:
10,031 bases
Orientation:
Minus strand
chr17:79,276,624-79,283,048
(GRCh37/hg19)
Size:
6,425 bases
Orientation:
Minus strand

Genomic View for LINC00482 Gene

Genes around LINC00482 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00482 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00482 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00482 Gene

Proteins for LINC00482 Gene

  • Protein details for LINC00482 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N8I6-CQ055_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00482
    Protein Accession:
    Q8N8I6

    Protein attributes for LINC00482 Gene

    Size:
    264 amino acids
    Molecular mass:
    28326 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00482 Gene

Post-translational modifications for LINC00482 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for LINC00482 Gene

Domains & Families for LINC00482 Gene

Protein Domains for LINC00482 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC00482: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00482 Gene

Function for LINC00482 Gene

Phenotypes From GWAS Catalog for LINC00482 Gene

Gene Ontology (GO) - Molecular Function for LINC00482 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with LINC00482: view
genes like me logo Genes that share phenotypes with LINC00482: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00482

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00482 Gene

Localization for LINC00482 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00482 Gene

Pathways & Interactions for LINC00482 Gene

PathCards logo

SuperPathways for LINC00482 Gene

No Data Available

Interacting Proteins for LINC00482 Gene

Selected Interacting proteins: Q8N8I6-CQ055_HUMAN for LINC00482 Gene via UniProtKB IID

Symbol External ID(s) Details
RBPMS
;

Gene Ontology (GO) - Biological Process for LINC00482 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00482 Gene

Drugs & Compounds for LINC00482 Gene

No Compound Related Data Available

Transcripts for LINC00482 Gene

mRNA/cDNA for LINC00482 Gene

8 RNACentral transcripts :
2 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
8 LNCipedia transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00482

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00482 Gene

No ASD Table

Relevant External Links for LINC00482 Gene

GeneLoc Exon Structure for
LINC00482

Expression for LINC00482 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00482 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00482 Gene

This gene is overexpressed in Whole Blood (x6.4), Liver (x4.6), and Spleen (x4.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00482

SOURCE GeneReport for Unigene cluster for LINC00482 Gene:

Hs.631762
genes like me logo Genes that share expression patterns with LINC00482: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00482 Gene

Orthologs for LINC00482 Gene

Evolution for LINC00482 Gene

ENSEMBL:
Gene Tree for LINC00482 (if available)
TreeFam:
Gene Tree for LINC00482 (if available)

No data available for Orthologs for LINC00482 Gene

Paralogs for LINC00482 Gene

No data available for Paralogs for LINC00482 Gene

Variants for LINC00482 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC00482 Gene

SNP ID Clinical significance and condition Chr 17 pos Variation AA Info Type
rs2048058 - p.Arg119Cys
rs2056439 - p.Val50Leu

Additional dbSNP identifiers (rs#s) for LINC00482 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00482 Gene

Variant ID Type Subtype PubMed ID
esv26223 CNV gain+loss 19812545
esv2758707 CNV gain 17122850
nsv1160499 CNV deletion 26073780
nsv428351 CNV gain 18775914
nsv470619 CNV loss 18288195
nsv828128 CNV loss 20364138
nsv952389 CNV deletion 24416366

Additional Variant Information for LINC00482 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00482

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00482 Gene

Disorders for LINC00482 Gene

Additional Disease Information for LINC00482

No disorders were found for LINC00482 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00482 Gene

Publications for LINC00482 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 54
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 54
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 54
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC00482 Gene

Sources for LINC00482 Gene