Aliases for LINC00479 Gene

Subcategory (RNA class) for LINC00479 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC00479 Gene

  • Long Intergenic Non-Protein Coding RNA 479 2 3 5
  • C21orf129 3 4
  • LINC00479 2 170
  • Putative Uncharacterized Protein Encoded By LINC00479 4
  • Chromosome 21 Open Reading Frame 129 2
  • HSALNG0133237 169
  • NONHSAG032915 94
  • PRED76 3

External Ids for LINC00479 Gene

Previous HGNC Symbols for LINC00479 Gene

  • C21orf129

Previous GeneCards Identifiers for LINC00479 Gene

  • GC21M043132

Summaries for LINC00479 Gene

GeneCards Summary for LINC00479 Gene

LINC00479 (Long Intergenic Non-Protein Coding RNA 479) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00479 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00479 Gene

Genomics for LINC00479 Gene

GeneHancer (GH) Regulatory Elements for LINC00479 Gene

Promoters and enhancers for LINC00479 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J041710 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas dbSUPER 756.4 +1.7 1718 7.1 MLX RBPJ TCF7L2 NR2F6 ZNF217 MIXL1 HLF MNT ZNF652 RERE LINC00479 LINC00112 PRDM15 lnc-RIPK4-2 LINC00111
GH21J041760 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 33.1 -50.2 -50167 10.8 CTCF ZBTB6 MLX RBPJ POLR2A CTBP1 NR2F6 MIXL1 HLF RAD21 RIPK4 LOC102724800 LINC00479 PRDM15 ENSG00000236883 LINC00112 MX2 ZBTB21 MX1 ABCG1
GH21J041756 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 32.4 -37.4 -37401 6.8 FOXA1 RBPJ NR2F1 NR2F6 MIXL1 HLF MNT RERE ELF3 SP1 LINC00479 LINC00112 PRDM15 MIR6814 RIPK4
GH21J041725 Enhancer 0.9 ENCODE dbSUPER 29.4 -11.3 -11322 2.8 ZNF133 ZNF652 FOSL2 ZIC2 GATAD2A RXRB ZFX KAT7 JUND EZH2 LINC00479 ENSG00000227698 HSALNG0133240 lnc-RIPK4-2
GH21J041758 Enhancer 0.6 dbSUPER 33.2 -43.7 -43664 1.6 ZNF121 BCL6B SP1 MAFK PRDM1 ZIC2 RXRA ZNF140 TCF7L2 JUND LINC00479 PRDM15 LINC00112 ENSG00000227698 RIPK4 MIR6814
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00479 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00479 Gene

Genomic Locations for LINC00479 Gene
chr21:41,711,520-41,715,776
(GRCh38/hg38)
Size:
4,257 bases
Orientation:
Minus strand
chr21:43,131,680-43,135,935
(GRCh37/hg19)
Size:
4,256 bases
Orientation:
Minus strand

Genomic View for LINC00479 Gene

Genes around LINC00479 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00479 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00479 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00479 Gene

Proteins for LINC00479 Gene

  • Protein details for LINC00479 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96M42-CU129_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00479
    Protein Accession:
    Q96M42
    Secondary Accessions:
    • D3DSJ3

    Protein attributes for LINC00479 Gene

    Size:
    142 amino acids
    Molecular mass:
    15208 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00479 Gene

Post-translational modifications for LINC00479 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00479 Gene

Domains & Families for LINC00479 Gene

Protein Domains for LINC00479 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC00479: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00479 Gene

Function for LINC00479 Gene

Phenotypes From GWAS Catalog for LINC00479 Gene

Phenotypes for LINC00479 Gene

GenomeRNAi human phenotypes for LINC00479:
genes like me logo Genes that share phenotypes with LINC00479: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00479

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00479 Gene

Localization for LINC00479 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00479 Gene

Pathways & Interactions for LINC00479 Gene

PathCards logo

SuperPathways for LINC00479 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00479 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00479 Gene

Drugs & Compounds for LINC00479 Gene

No Compound Related Data Available

Transcripts for LINC00479 Gene

mRNA/cDNA for LINC00479 Gene

(2) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(7) RNACentral transcripts :
(6) LNCipedia transcripts :
(7) NONCODE transcripts :
(3) LncBook transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00479

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00479 Gene

No ASD Table

Relevant External Links for LINC00479 Gene

GeneLoc Exon Structure for
LINC00479
ECgene alternative splicing isoforms for
LINC00479

Expression for LINC00479 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00479 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00479 Gene

This gene is overexpressed in Testis (x10.1) and Small Intestine - Terminal Ileum (x8.3).

Protein differential expression in normal tissues from HIPED for LINC00479 Gene

This gene is overexpressed in Adipocyte (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for LINC00479 Gene



Protein tissue co-expression partners for LINC00479 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00479 Gene:

LINC00479

SOURCE GeneReport for Unigene cluster for LINC00479 Gene:

Hs.350679
genes like me logo Genes that share expression patterns with LINC00479: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00479 Gene

Orthologs for LINC00479 Gene

Evolution for LINC00479 Gene

ENSEMBL:
Gene Tree for LINC00479 (if available)
TreeFam:
Gene Tree for LINC00479 (if available)

No data available for Orthologs for LINC00479 Gene

Paralogs for LINC00479 Gene

No data available for Paralogs for LINC00479 Gene

Variants for LINC00479 Gene

Sequence variations from dbSNP and Humsavar for LINC00479 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000139181 -- 41,712,967(-) C/A/T non_coding_transcript_variant
rs1000523015 -- 41,711,737(-) G/A non_coding_transcript_variant
rs1000596605 -- 41,714,325(-) C/G non_coding_transcript_variant
rs1002167087 -- 41,716,530(-) C/T upstream_transcript_variant
rs1002302801 -- 41,716,713(-) C/G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00479 Gene

Variant ID Type Subtype PubMed ID
dgv7848n54 CNV loss 21841781
esv3893416 CNV gain 25118596
nsv1065094 CNV loss 25217958
nsv459264 CNV loss 19166990

Additional Variant Information for LINC00479 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00479

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00479 Gene

Disorders for LINC00479 Gene

Additional Disease Information for LINC00479

No disorders were found for LINC00479 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00479 Gene

Publications for LINC00479 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 56
  2. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 3 4 56
  3. Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters. (PMID: 20494980) Warnatz HJ … Yaspo ML (Nucleic acids research 2010) 3 56
  4. Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1. (PMID: 16009131) Carroll JS … Brown M (Cell 2005) 3 56
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for LINC00479 Gene

Sources for LINC00479 Gene