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Aliases for LINC00477 Gene
Data sources for LINC00477 Gene:
Subcategory (RNA class) for LINC00477 Gene
lncRNA
Aliases for LINC00477 Gene
- Long Intergenic Non-Protein Coding RNA 477 (HGNC, NCBI Entrez Gene, Ensembl)
- Family With Sequence Similarity 191, Member B (HGNC, NCBI Entrez Gene)
- LINC00477 (Ensembl, LNCipedia)
- C12orf67 (NCBI Entrez Gene, UniProtKB/Swiss-Prot)
- FAM191B (HGNC, NCBI Entrez Gene)
- Putative Transmembrane Protein Encoded By LINC00477 (UniProtKB/Swiss-Prot)
- Chromosome 12 Open Reading Frame 67 (HGNC)
- NONHSAG010689.2 (NONCODE)
- HSALNG0089868 (LncBook)
- FLJ32894 (HGNC)
External Ids for LINC00477 Gene
- HGNC: 26557
- NCBI Entrez Gene: 144360
- Ensembl: ENSG00000197503
- UniProtKB/Swiss-Prot: Q96M19
Previous HGNC Symbols for LINC00477 Gene
- C12orf67
Previous GeneCards Identifiers for LINC00477 Gene
- GC12M024720
Summaries for LINC00477 Gene
GeneCards Summary for LINC00477 Gene
LINC00477 (Long Intergenic Non-Protein Coding RNA 477) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC00477 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00477 Gene
Genomics for LINC00477 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC00477 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH12J024584 | Promoter/Enhancer | 0.6 | EPDnew Ensembl | 250.7 | +0.1 | 68 | 0.6 | ELF1 | LINC00477 KNOP1P1 lnc-LRMP-9 piR-57131 SOX5 BCAT1 | |
| GH12J024695 | Enhancer | 1 | Ensembl ENCODE | 4.6 | -113.3 | -113331 | 3.8 | ZNF395 ZNF740 FOXA2 VEZF1 NBN ZEB2 TAL1 RELA ZFP91 ZNF316 | ENSG00000255745 LINC00477 piR-43105-104 LOC105369698 piR-38352-104 HSALNG0089873 SOX5 BCAT1 | |
| GH12J024547 | Enhancer | 0.6 | dbSUPER | 5.8 | +34.1 | 34109 | 4.8 | CEBPA FOXA2 MAFF RXRA FOXP1 SOX5 JUND FOXA1 HHEX RAD21 | LINC00477 RF00017-1111 lnc-SOX5-5 SOX5 MN298114-034 | |
| GH12J024590 | Enhancer | 0.3 | Ensembl | 5.6 | -7.4 | -7432 | 1.6 | NANOG POLR2A | LINC00477 SOX5 piR-40476-020 BCAT1 | |
| GH12J024617 | Enhancer | 0.3 | Ensembl ENCODE | 4.9 | -33.6 | -33632 | 0.8 | LINC00477 piR-40476-020 SOX5 LOC105369698 BCAT1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC00477 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC00477 Gene
Latest Assembly
- chr12:24,563,990-24,584,169
- (GRCh38/hg38)
- Size:
- 20,180 bases
- Orientation:
- Minus strand
Previous Assembly
- chr12:24,719,898-24,737,102
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 17,205 bases
- Orientation:
- Minus strand
- chr12:24,719,898-24,737,102
- (GRCh37/hg19 by Ensembl)
- Size:
- 17,205 bases
- Orientation:
- Minus strand
Genomic View for LINC00477 Gene
Genes around LINC00477 on UCSC Golden Path with GeneCards custom track
LINC00477 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 12p12.1 by HGNC
- 12p12.1 by Entrez Gene
- 12p12.1 by Ensembl
LINC00477 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC00477 Gene
Proteins for LINC00477 Gene
-
Protein details for LINC00477 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q96M19-CL067_HUMAN
- Recommended name:
- Putative transmembrane protein encoded by LINC00477
- Protein Accession:
- Q96M19
Protein attributes for LINC00477 Gene
- Size:
- 166 amino acids
- Molecular mass:
- 18185 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for LINC00477 Gene
-
Glycosylation at Asn7
- NX_Q96M19 (NX_Q96M19-1)
Antibodies for research
Protein products for research
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC00477
- Origene Custom Protein Services for LINC00477
Assay products for research
No data available for DME Specific Peptides for LINC00477 Gene
Domains & Families for LINC00477 Gene
Gene Families for LINC00477 Gene
Protein Domains for LINC00477 Gene
- ProtoNet:
Suggested Antigen Peptide Sequences for LINC00477 Gene
- GenScript: Design optimal peptide antigens:
-
- Transmembrane protein C12orf67 (CL067_HUMAN)
No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00477 Gene
Function for LINC00477 Gene
Phenotypes From GWAS Catalog for LINC00477 Gene
Phenotypes for LINC00477 Gene
- GenomeRNAi human phenotypes for LINC00477:
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for LINC00477 - Starting at $85 >
- * LINC00477 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LINC00477
Inhibitory RNAs for research
- Origene shrna, sirna, and RNAi products in human, mouse, rat for LINC00477
- Browse OriGene Inhibitory RNA Products For LINC00477
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00477
Clone products for research
- Applied Biological Materials (abm): Clones for LINC00477 - Starting at $45 >
- * LINC00477 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LINC00477
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00477 Gene
Localization for LINC00477 Gene
Subcellular locations from UniProtKB/Swiss-Prot for LINC00477 Gene
- Membrane. Multi-pass membrane protein.
| Compartment | Confidence |
|---|---|
| extracellular | 1 |
| endosome | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0016021 | integral component of membrane | IEA | -- |
No data available for Subcellular locations from the Human Protein Atlas (HPA) for LINC00477 Gene
Transcripts for LINC00477 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00477 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00006158E3_9606 | lncRNA | 1710 | 4 |
RefSeq: NR_029451, Ensembl: ENST00000483544 (view in UCSC) , LNCipedia: LINC00477:1, NONCODE: NONHSAT027324.2, |
| URS0001BED0CE_9606 | lncRNA | 4576 | 1 |
LncBook: HSALNT0186670, |
| URS0001BCA7CC_9606 | lncRNA | 4446 | 1 |
LncBook: HSALNT0186669, |
| URS0000D59A0B_9606 | lncRNA | 4247 | 1 |
LNCipedia: LINC00477:3, |
| URS0000E949E8_9606 | lncRNA | 4123 | 1 |
LncBook: HSALNT0186668, |
LINC00477 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC00477 Gene
- 1 REFSEQ mRNAs :
- 3 NCBI additional mRNA sequence :
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for LINC00477 - Starting at $85 >
- * LINC00477 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LINC00477
Inhibitory RNAs for research
- Origene shrna, sirna, and RNAi products in human, mouse, rat for LINC00477
- Browse OriGene Inhibitory RNA Products For LINC00477
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00477
Clone products for research
- Applied Biological Materials (abm): Clones for LINC00477 - Starting at $45 >
- * LINC00477 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LINC00477
Relevant External Links for LINC00477 Gene
- GeneLoc Exon Structure for
- LINC00477
Expression for LINC00477 Gene
mRNA differential expression in normal tissues according to GTEx for LINC00477 Gene
This gene is overexpressed in Testis (x43.3).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00477
SOURCE GeneReport for Unigene cluster for LINC00477 Gene:
Hs.350668Primer products for research
-
OriGene qPCR primer pairs for LINC00477
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00477 Gene
Orthologs for LINC00477 Gene
No data available for Orthologs for LINC00477 Gene
Paralogs for LINC00477 Gene
No data available for Paralogs for LINC00477 Gene
Variants for LINC00477 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for LINC00477 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC00477
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00477 Gene
Disorders for LINC00477 Gene
Additional Disease Information for LINC00477
No disorders were found for LINC00477 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00477 Gene
Publications for LINC00477 Gene
- The opposite role of alternatively spliced isoforms of LINC00477 in gastric cancer. (PMID: 31191018) Zhao H … Zhang X (Cancer management and research 2019) 2 3
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
- Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders. (PMID: 23583979) den Hoed M … Loos RJ (Nature genetics 2013) 3
- Genome-wide association of lipid-lowering response to statins in combined study populations. (PMID: 20339536) Barber MJ … Krauss RM (PloS one 2010) 3
- Genome-wide association analysis identifies multiple loci related to resting heart rate. (PMID: 20639392) Eijgelsheim M … O'Donnell CJ (Human molecular genetics 2010) 3
Products for LINC00477 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC00477
- Origene Custom Protein Services for LINC00477
- Origene shrna, sirna, and RNAi products in human, mouse, rat for LINC00477
- Browse OriGene Inhibitory RNA Products For LINC00477
- OriGene qPCR primer pairs for LINC00477
- Browse CRISPR knockouts for LINC00477
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC00477
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- antibodies-online: Search results for available LINC00477 related products ranked by validation data
- antibodies-online: Search results for available LINC00477 related products ranked by validation data
- antibodies-online: Search results for available LINC00477 related products ranked by validation data
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LINC00477
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LINC00477
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC00477
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00477
Sources for LINC00477 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB