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Aliases for LINC00477 Gene
Subcategory (RNA class) for LINC00477 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LINC00477 Gene
External Ids for LINC00477 Gene
- HGNC: 26557
- Entrez Gene: 144360
- Ensembl: ENSG00000197503
- UniProtKB: Q96M19
Previous HGNC Symbols for LINC00477 Gene
- C12orf67
Previous GeneCards Identifiers for LINC00477 Gene
- GC12M024720
Summaries for LINC00477 Gene
GeneCards Summary for LINC00477 Gene
LINC00477 (Long Intergenic Non-Protein Coding RNA 477) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC00477 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00477 Gene
Genomics for LINC00477 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC00477 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH12J024584 | Promoter/Enhancer | 0.6 | EPDnew Ensembl | 600.7 | +0.1 | 68 | 0.6 | ELF1 | LINC00477 KNOP1P1 lnc-LRMP-9 piR-57131 SOX5 BCAT1 | |
| GH12J024695 | Enhancer | 1 | Ensembl ENCODE | 4.6 | -112.0 | -112010 | 1.2 | LEF1 ZNF740 BRD9 DPF2 SOX6 TCF12 EP300 MGA CBX3 ZNF766 | ENSG00000255745 LINC00477 LOC105369698 piR-43105-104 piR-38352-104 SOX5 BCAT1 | |
| GH12J024547 | Enhancer | 0.6 | dbSUPER | 5.8 | +34.1 | 34109 | 4.8 | GATAD2A PRDM10 SOX13 CEBPA FOXA2 MAFF MAFK JUND HHEX FOXP1 | LINC00477 RF00017-1111 SOX5 lnc-SOX5-5 MN298114-039 | |
| GH12J024590 | Enhancer | 0.3 | Ensembl | 5.6 | -7.3 | -7332 | 1.4 | POLR2A NANOG | LINC00477 SOX5 piR-40476-020 BCAT1 | |
| GH12J024617 | Enhancer | 0.3 | Ensembl ENCODE | 4.9 | -33.7 | -33688 | 0.7 | LINC00477 piR-40476-020 SOX5 LOC105369698 BCAT1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC00477 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC00477 Gene
Genomic Locations for LINC00477 Gene
- chr12:24,563,991-24,584,169
- (GRCh38/hg38)
- Size:
- 20,179 bases
- Orientation:
- Minus strand
- chr12:24,719,898-24,737,102
- (GRCh37/hg19)
- Size:
- 17,205 bases
- Orientation:
- Minus strand
Genomic View for LINC00477 Gene
Genes around LINC00477 on UCSC Golden Path with GeneCards custom track
LINC00477 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 12p12.1 by HGNC
- 12p12.1 by Entrez Gene
- 12p12.1 by Ensembl
LINC00477 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC00477 Gene
Proteins for LINC00477 Gene
-
Protein details for LINC00477 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q96M19-CL067_HUMAN
- Recommended name:
- Putative transmembrane protein encoded by LINC00477
- Protein Accession:
- Q96M19
Protein attributes for LINC00477 Gene
- Size:
- 166 amino acids
- Molecular mass:
- 18185 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for LINC00477 Gene
-
Glycosylation at Asn7
- NX_Q96M19 (NX_Q96M19-1)
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC00477
- Origene Custom Protein Services for LINC00477
No data available for DME Specific Peptides for LINC00477 Gene
Domains & Families for LINC00477 Gene
Gene Families for LINC00477 Gene
Protein Domains for LINC00477 Gene
- ProtoNet:
Suggested Antigen Peptide Sequences for LINC00477 Gene
- GenScript: Design optimal peptide antigens:
-
- Transmembrane protein C12orf67 (CL067_HUMAN)
No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00477 Gene
Function for LINC00477 Gene
Phenotypes From GWAS Catalog for LINC00477 Gene
Phenotypes for LINC00477 Gene
- GenomeRNAi human phenotypes for LINC00477:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for LINC00477 - Select products 50% OFF >
- * LINC00477 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for LINC00477
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LINC00477
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for LINC00477
- Browse OriGene Inhibitory RNA Products For LINC00477
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00477
Clone Products
- Applied Biological Materials (abm): Clones for LINC00477 - Select products 50% OFF >
- * LINC00477 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
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No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00477 Gene
Localization for LINC00477 Gene
Subcellular locations from UniProtKB/Swiss-Prot for LINC00477 Gene
- Membrane. Multi-pass membrane protein.
| Compartment | Confidence |
|---|---|
| extracellular | 1 |
| endosome | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0016021 | integral component of membrane | IEA | -- |
No data available for Subcellular locations from the Human Protein Atlas (HPA) for LINC00477 Gene
Transcripts for LINC00477 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00477 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00006158E3_9606 | lncRNA | 1710 | 5 |
HGNC: 26557, RefSeq: NR_029451, Ensembl: ENST00000483544 (view in UCSC) , LNCipedia: LINC00477:1, NONCODE: NONHSAT027324.2, |
| URS0000D59A0B_9606 | lncRNA | 4247 | 1 |
LNCipedia: LINC00477:3, |
| URS0000E949E8_9606 | lncRNA | 4123 | 1 |
LncBook: HSALNT0186668, |
| URS0000D5AA40_9606 | lncRNA | 1813 | 1 |
LNCipedia: LINC00477:2, |
| URS00009B6E37_9606 | lncRNA | 1710 | 1 |
NONCODE: NONHSAT163373.1, |
LINC00477 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC00477 Gene
- 1 REFSEQ mRNAs :
- 3 NCBI additional mRNA sequence :
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for LINC00477 - Select products 50% OFF >
- * LINC00477 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for LINC00477
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LINC00477
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for LINC00477
- Browse OriGene Inhibitory RNA Products For LINC00477
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00477
Clone Products
- Applied Biological Materials (abm): Clones for LINC00477 - Select products 50% OFF >
- * LINC00477 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LINC00477
Relevant External Links for LINC00477 Gene
- GeneLoc Exon Structure for
- LINC00477
Expression for LINC00477 Gene
mRNA differential expression in normal tissues according to GTEx for LINC00477 Gene
This gene is overexpressed in Testis (x43.3).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00477
SOURCE GeneReport for Unigene cluster for LINC00477 Gene:
Hs.350668Primer Products
-
OriGene qPCR primer pairs for LINC00477
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00477 Gene
Orthologs for LINC00477 Gene
No data available for Orthologs for LINC00477 Gene
Paralogs for LINC00477 Gene
No data available for Paralogs for LINC00477 Gene
Variants for LINC00477 Gene
Additional Variant Information for LINC00477 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC00477
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00477 Gene
Disorders for LINC00477 Gene
Additional Disease Information for LINC00477
No disorders were found for LINC00477 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00477 Gene
Publications for LINC00477 Gene
- The opposite role of alternatively spliced isoforms of LINC00477 in gastric cancer. (PMID: 31191018) Zhao H … Zhang X (Cancer management and research 2019) 2 3
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
- Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders. (PMID: 23583979) den Hoed M … Loos RJ (Nature genetics 2013) 3
- Genome-wide association of lipid-lowering response to statins in combined study populations. (PMID: 20339536) Barber MJ … Krauss RM (PloS one 2010) 3
- Genome-wide association analysis identifies multiple loci related to resting heart rate. (PMID: 20639392) Eijgelsheim M … O'Donnell CJ (Human molecular genetics 2010) 3
Products for LINC00477 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC00477
- Origene Custom Protein Services for LINC00477
- Origene shrna, sirna, and RNAi products in human, mouse, rat for LINC00477
- Browse OriGene Inhibitory RNA Products For LINC00477
- OriGene qPCR primer pairs for LINC00477
- Browse CRISPR knockouts for LINC00477
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC00477
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- VectorBuilder Custom and pre-made DNA vectors for LINC00477 (ie. gene expression, shRNA knockdown, CRISPR)
- VectorBuilder Viral vectors for LINC00477 (ie. lentivirus, AAV, adenovirus)
- VectorBuilder CRISPR vectors for LINC00477 (ie. knockout, knockin, CRISPRa, CRISPRi)
- VectorBuilder Virus packaging for LINC00477 CRISPR vectors (ie. lentivirus, AAV, adenovirus)
- VectorBuilder Stable cell line generation for LINC00477
- antibodies-online: Search results for available LINC00477 related products ranked by validation data
- antibodies-online: Search results for available LINC00477 related products ranked by validation data
- antibodies-online: Search results for available LINC00477 related products ranked by validation data
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LINC00477
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LINC00477
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC00477
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00477
Sources for LINC00477 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB