Aliases for LINC00477 Gene

Subcategory (RNA class) for LINC00477 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00477 Gene

  • Long Intergenic Non-Protein Coding RNA 477 2 3 5
  • LINC00477 2 5 165
  • Family With Sequence Similarity 191, Member B 2 3
  • C12orf67 3 4
  • FAM191B 2 3
  • Putative Transmembrane Protein Encoded By LINC00477 4
  • Chromosome 12 Open Reading Frame 67 2
  • NONHSAG010689.2 91
  • HSALNG0089868 164
  • FLJ32894 2

External Ids for LINC00477 Gene

Previous HGNC Symbols for LINC00477 Gene

  • C12orf67

Previous GeneCards Identifiers for LINC00477 Gene

  • GC12M024720

Summaries for LINC00477 Gene

GeneCards Summary for LINC00477 Gene

LINC00477 (Long Intergenic Non-Protein Coding RNA 477) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00477 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00477 Gene

Genomics for LINC00477 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00477 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J024584 Promoter/Enhancer 0.6 EPDnew Ensembl 600.7 +0.1 68 0.6 ELF1 LINC00477 KNOP1P1 lnc-LRMP-9 piR-57131 SOX5 BCAT1
GH12J024695 Enhancer 1 Ensembl ENCODE 4.6 -112.0 -112010 1.2 LEF1 ZNF740 BRD9 DPF2 SOX6 TCF12 EP300 MGA CBX3 ZNF766 ENSG00000255745 LINC00477 LOC105369698 piR-43105-104 piR-38352-104 SOX5 BCAT1
GH12J024547 Enhancer 0.6 dbSUPER 5.8 +34.1 34109 4.8 GATAD2A PRDM10 SOX13 CEBPA FOXA2 MAFF MAFK JUND HHEX FOXP1 LINC00477 RF00017-1111 SOX5 lnc-SOX5-5 MN298114-039
GH12J024590 Enhancer 0.3 Ensembl 5.6 -7.3 -7332 1.4 POLR2A NANOG LINC00477 SOX5 piR-40476-020 BCAT1
GH12J024617 Enhancer 0.3 Ensembl ENCODE 4.9 -33.7 -33688 0.7 LINC00477 piR-40476-020 SOX5 LOC105369698 BCAT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00477 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00477 Gene

Genomic Locations for LINC00477 Gene
chr12:24,563,991-24,584,169
(GRCh38/hg38)
Size:
20,179 bases
Orientation:
Minus strand
chr12:24,719,898-24,737,102
(GRCh37/hg19)
Size:
17,205 bases
Orientation:
Minus strand

Genomic View for LINC00477 Gene

Genes around LINC00477 on UCSC Golden Path with GeneCards custom track
LINC00477 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00477 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00477 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00477 Gene

Proteins for LINC00477 Gene

  • Protein details for LINC00477 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96M19-CL067_HUMAN
    Recommended name:
    Putative transmembrane protein encoded by LINC00477
    Protein Accession:
    Q96M19

    Protein attributes for LINC00477 Gene

    Size:
    166 amino acids
    Molecular mass:
    18185 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00477 Gene

Post-translational modifications for LINC00477 Gene

  • Glycosylation at Asn7

No data available for DME Specific Peptides for LINC00477 Gene

Domains & Families for LINC00477 Gene

Gene Families for LINC00477 Gene

Protein Domains for LINC00477 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for LINC00477 Gene

GenScript: Design optimal peptide antigens:
  • Transmembrane protein C12orf67 (CL067_HUMAN)
genes like me logo Genes that share domains with LINC00477: view

No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00477 Gene

Function for LINC00477 Gene

Phenotypes From GWAS Catalog for LINC00477 Gene

genes like me logo Genes that share phenotypes with LINC00477: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00477

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00477 Gene

Localization for LINC00477 Gene

Subcellular locations from UniProtKB/Swiss-Prot for LINC00477 Gene

Membrane. Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00477 gene
Compartment Confidence
extracellular 1
endosome 1

Gene Ontology (GO) - Cellular Components for LINC00477 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with LINC00477: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for LINC00477 Gene

Pathways & Interactions for LINC00477 Gene

PathCards logo

SuperPathways for LINC00477 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00477 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00477 Gene

Drugs & Compounds for LINC00477 Gene

No Compound Related Data Available

Transcripts for LINC00477 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00477 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006158E3_9606 lncRNA 1710 5

HGNC: 26557,

RefSeq: NR_029451,

Ensembl: ENST00000483544 (view in UCSC) ,

LNCipedia: LINC00477:1,

NONCODE: NONHSAT027324.2,

URS0000D59A0B_9606 lncRNA 4247 1

LNCipedia: LINC00477:3,

URS0000E949E8_9606 lncRNA 4123 1

LncBook: HSALNT0186668,

URS0000D5AA40_9606 lncRNA 1813 1

LNCipedia: LINC00477:2,

URS00009B6E37_9606 lncRNA 1710 1

NONCODE: NONHSAT163373.1,

LINC00477 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00477 Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00477

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00477 Gene

No ASD Table

Relevant External Links for LINC00477 Gene

GeneLoc Exon Structure for
LINC00477

Expression for LINC00477 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00477 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00477 Gene

This gene is overexpressed in Testis (x43.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00477

SOURCE GeneReport for Unigene cluster for LINC00477 Gene:

Hs.350668
genes like me logo Genes that share expression patterns with LINC00477: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00477 Gene

Orthologs for LINC00477 Gene

Evolution for LINC00477 Gene

ENSEMBL:
Gene Tree for LINC00477 (if available)
TreeFam:
Gene Tree for LINC00477 (if available)

No data available for Orthologs for LINC00477 Gene

Paralogs for LINC00477 Gene

No data available for Paralogs for LINC00477 Gene

Variants for LINC00477 Gene

Additional dbSNP identifiers (rs#s) for LINC00477 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00477 Gene

Variant ID Type Subtype PubMed ID
esv2422312 CNV duplication 17116639
nsv1046463 CNV gain 25217958
nsv469169 CNV gain 19166990
nsv557775 CNV gain 21841781
nsv645 CNV deletion 18451855
nsv832352 CNV gain 17160897
nsv975460 CNV duplication 23825009

Additional Variant Information for LINC00477 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00477

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00477 Gene

Disorders for LINC00477 Gene

Additional Disease Information for LINC00477

No disorders were found for LINC00477 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00477 Gene

Publications for LINC00477 Gene

  1. The opposite role of alternatively spliced isoforms of LINC00477 in gastric cancer. (PMID: 31191018) Zhao H … Zhang X (Cancer management and research 2019) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  3. Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders. (PMID: 23583979) den Hoed M … Loos RJ (Nature genetics 2013) 3
  4. Genome-wide association of lipid-lowering response to statins in combined study populations. (PMID: 20339536) Barber MJ … Krauss RM (PloS one 2010) 3
  5. Genome-wide association analysis identifies multiple loci related to resting heart rate. (PMID: 20639392) Eijgelsheim M … O'Donnell CJ (Human molecular genetics 2010) 3

Products for LINC00477 Gene

Sources for LINC00477 Gene