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LINC00477 (Long Intergenic Non-Protein Coding RNA 477) is an RNA Gene, and is affiliated with the lncRNA class.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH12J024584 | Promoter/Enhancer | 0.6 | EPDnew Ensembl | 250.7 | +0.1 | 68 | 0.6 | ELF1 | LINC00477 KNOP1P1 lnc-LRMP-9 piR-57131 SOX5 BCAT1 | |
GH12J024695 | Enhancer | 1 | Ensembl ENCODE | 4.6 | -113.3 | -113331 | 3.8 | ZNF395 ZNF740 FOXA2 VEZF1 NBN ZEB2 TAL1 RELA ZFP91 ZNF316 | ENSG00000255745 LINC00477 piR-43105-104 LOC105369698 piR-38352-104 HSALNG0089873 SOX5 BCAT1 | |
GH12J024547 | Enhancer | 0.6 | dbSUPER | 5.8 | +34.1 | 34109 | 4.8 | CEBPA FOXA2 MAFF RXRA FOXP1 SOX5 JUND FOXA1 HHEX RAD21 | LINC00477 RF00017-1111 lnc-SOX5-5 SOX5 MN298114-034 | |
GH12J024590 | Enhancer | 0.3 | Ensembl | 5.6 | -7.4 | -7432 | 1.6 | NANOG POLR2A | LINC00477 SOX5 piR-40476-020 BCAT1 | |
GH12J024617 | Enhancer | 0.3 | Ensembl ENCODE | 4.9 | -33.6 | -33632 | 0.8 | LINC00477 piR-40476-020 SOX5 LOC105369698 BCAT1 |
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0016021 | integral component of membrane | IEA | -- |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS00006158E3_9606 | lncRNA | 1710 | 4 |
RefSeq: NR_029451, Ensembl: ENST00000483544 (view in UCSC) , LNCipedia: LINC00477:1, NONCODE: NONHSAT027324.2, |
URS0001BED0CE_9606 | lncRNA | 4576 | 1 |
LncBook: HSALNT0186670, |
URS0001BCA7CC_9606 | lncRNA | 4446 | 1 |
LncBook: HSALNT0186669, |
URS0000D59A0B_9606 | lncRNA | 4247 | 1 |
LNCipedia: LINC00477:3, |
URS0000E949E8_9606 | lncRNA | 4123 | 1 |
LncBook: HSALNT0186668, |
No disorders were found for LINC00477 Gene.