Aliases for LINC00475 Gene

Subcategory (RNA class) for LINC00475 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for LINC00475 Gene

  • Long Intergenic Non-Protein Coding RNA 475 2 3 5
  • LINC00475 2 5
  • Chromosome 9 Open Reading Frame 44 2
  • NONHSAG052835.2 91
  • NONHSAG052837.2 91
  • NONHSAG052836.2 91
  • HSALNG0072753 164
  • HSALNG0072752 164
  • Lnc-CENPP-20 165
  • C9orf44 3

External Ids for LINC00475 Gene

Previous HGNC Symbols for LINC00475 Gene

  • C9orf44

Previous GeneCards Identifiers for LINC00475 Gene

  • GC09P094906
  • GC09P094909
  • GC09P092142
  • GC09P092169
  • GC09P092177
  • GC09P092184
  • GC09P092199
  • GC09P092143
  • GC09P092149
  • GC09P092155
  • GC09P092161

Summaries for LINC00475 Gene

GeneCards Summary for LINC00475 Gene

LINC00475 (Long Intergenic Non-Protein Coding RNA 475) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for LINC00475 Gene

Additional gene information for LINC00475 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LINC00475 Gene

Genomics for LINC00475 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00475 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00475 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00475 Gene

Genomic Locations for LINC00475 Gene
chr9:92,134,201-92,161,523
(GRCh38/hg38)
Size:
27,323 bases
Orientation:
Plus strand
chr9:94,903,580-94,922,396
(GRCh37/hg19)
Size:
18,817 bases
Orientation:
Plus strand

Genomic View for LINC00475 Gene

Genes around LINC00475 on UCSC Golden Path with GeneCards custom track
LINC00475 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00475 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00475 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00475 Gene

Proteins for LINC00475 Gene

Post-translational modifications for LINC00475 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00475 Gene

Domains & Families for LINC00475 Gene

Gene Families for LINC00475 Gene

genes like me logo Genes that share domains with LINC00475: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00475 Gene

Function for LINC00475 Gene

Phenotypes From GWAS Catalog for LINC00475 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00475 Gene

Localization for LINC00475 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00475 gene
Compartment Confidence
endoplasmic reticulum 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00475 Gene

Pathways & Interactions for LINC00475 Gene

PathCards logo

SuperPathways for LINC00475 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00475 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00475 Gene

Drugs & Compounds for LINC00475 Gene

No Compound Related Data Available

Transcripts for LINC00475 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00475 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E2BA_9606 lncRNA 2000 3

HGNC: 23569,

RefSeq: NR_027341,

LNCipedia: lnc-CENPP-20:25,

URS00008C259A_9606 lncRNA 1597 3

LncBook: HSALNT0152114,

LNCipedia: lnc-CENPP-20:33,

NONCODE: NONHSAT133176.2,

URS00008BB29D_9606 lncRNA 1544 3

LncBook: HSALNT0152108,

LNCipedia: lnc-CENPP-20:29,

NONCODE: NONHSAT133169.2,

URS00008C1078_9606 lncRNA 1184 3

LncBook: HSALNT0152117,

LNCipedia: lnc-CENPP-20:35,

NONCODE: NONHSAT133178.2,

URS00007CFF54_9606 lncRNA 796 3

LncBook: HSALNT0152116,

LNCipedia: lnc-CENPP-20:34,

NONCODE: NONHSAT133177.2,

LINC00475 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00475 Gene

2 NCBI additional mRNA sequence :
9 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00475 Gene

No ASD Table

Relevant External Links for LINC00475 Gene

GeneLoc Exon Structure for
LINC00475

Expression for LINC00475 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00475 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00475 Gene

This gene is overexpressed in Brain - Cerebellum (x4.6) and Brain - Cerebellar Hemisphere (x4.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00475

SOURCE GeneReport for Unigene cluster for LINC00475 Gene:

Hs.149940
genes like me logo Genes that share expression patterns with LINC00475: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00475 Gene

Orthologs for LINC00475 Gene

Evolution for LINC00475 Gene

ENSEMBL:
Gene Tree for LINC00475 (if available)
TreeFam:
Gene Tree for LINC00475 (if available)

No data available for Orthologs for LINC00475 Gene

Paralogs for LINC00475 Gene

No data available for Paralogs for LINC00475 Gene

Variants for LINC00475 Gene

Additional dbSNP identifiers (rs#s) for LINC00475 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00475 Gene

Variant ID Type Subtype PubMed ID
nsv1046733 CNV gain 25217958
nsv972778 CNV duplication 23825009
nsv972779 CNV duplication 23825009

Additional Variant Information for LINC00475 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00475

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00475 Gene

Disorders for LINC00475 Gene

Additional Disease Information for LINC00475

No disorders were found for LINC00475 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00475 Gene

Publications for LINC00475 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC00475 Gene

Sources for LINC00475 Gene