Aliases for LINC00470 Gene

Subcategory (RNA class) for LINC00470 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00470 Gene

  • Long Intergenic Non-Protein Coding RNA 470 2 3 5
  • LINC00470 2 168
  • C18orf2 3 4
  • Putative Uncharacterized Protein Encoded By LINC00470 4
  • Chromosome 18 Open Reading Frame 2 2
  • HSALNG0119601 167
  • NONHSAG023185 92
  • Lnc-YES1-10 168

External Ids for LINC00470 Gene

Previous HGNC Symbols for LINC00470 Gene

  • C18orf2

Summaries for LINC00470 Gene

GeneCards Summary for LINC00470 Gene

LINC00470 (Long Intergenic Non-Protein Coding RNA 470) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00470 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00470 Gene

Genomics for LINC00470 Gene

GeneHancer (GH) Regulatory Elements for LINC00470 Gene

Promoters and enhancers for LINC00470 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J001407 Promoter/Enhancer 1.2 Ensembl ENCODE 500.7 +1.3 1343 2 GTF2E2 PHB2 ZBTB5 AFF1 TOE1 MYC NFRKB HINFP TAF9B MIER1 LINC00470 LOC105371954
GH18J001270 Enhancer 0.7 ENCODE 0.1 +138.0 138049 0.1 TCF12 FOXA1 CUX1 TEAD1 CTBP1 FOXA2 CREB1 FOSL2 ZBTB33 NR3C1 piR-31534-291 piR-48209-290 LINC00470 ENSG00000263551
GH18J001374 Enhancer 0.2 Ensembl 0.3 +33.5 33543 0.8 LOC100129774 lnc-YES1-9 LOC105371954 LINC00470
GH18J001269 Enhancer 0.4 Ensembl 0.1 +138.5 138543 0.4 ZBTB33 ATF2 MAX FOSL2 YY1 piR-31534-291 piR-48209-290 LINC00470 ENSG00000263551
GH18J001271 Enhancer 0.3 Ensembl 0.1 +137.6 137643 0.2 ZBTB40 YY1 piR-31534-291 piR-48209-290 LINC00470 ENSG00000263551
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00470 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00470 Gene

Genomic Locations for LINC00470 Gene
chr18:1,254,383-1,408,344
(GRCh38/hg38)
Size:
153,962 bases
Orientation:
Minus strand
chr18:1,254,384-1,408,345
(GRCh37/hg19)
Size:
153,962 bases
Orientation:
Minus strand

Genomic View for LINC00470 Gene

Genes around LINC00470 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00470 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00470 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00470 Gene

Proteins for LINC00470 Gene

  • Protein details for LINC00470 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BZP3-CR002_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00470
    Protein Accession:
    Q9BZP3
    Secondary Accessions:
    • Q9BZP2
    • Q9BZP4

    Protein attributes for LINC00470 Gene

    Size:
    86 amino acids
    Molecular mass:
    9646 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for LINC00470 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for LINC00470 Gene

Post-translational modifications for LINC00470 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00470 Gene

Domains & Families for LINC00470 Gene

Gene Families for LINC00470 Gene

Protein Domains for LINC00470 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC00470: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00470 Gene

Function for LINC00470 Gene

Phenotypes From GWAS Catalog for LINC00470 Gene

Gene Ontology (GO) - Molecular Function for LINC00470 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with LINC00470: view

Phenotypes for LINC00470 Gene

GenomeRNAi human phenotypes for LINC00470:
genes like me logo Genes that share phenotypes with LINC00470: view

Animal Model Products

CRISPR Products

miRNA for LINC00470 Gene

miRTarBase miRNAs that target LINC00470

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00470

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LINC00470 Gene

Localization for LINC00470 Gene

Gene Ontology (GO) - Cellular Components for LINC00470 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
genes like me logo Genes that share ontologies with LINC00470: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for LINC00470 Gene

Pathways & Interactions for LINC00470 Gene

PathCards logo

SuperPathways for LINC00470 Gene

No Data Available

Interacting Proteins for LINC00470 Gene

Selected Interacting proteins: Q9BZP3-CR002_HUMAN for LINC00470 Gene via IID

Symbol External ID(s) Details
GNAL
;

Gene Ontology (GO) - Biological Process for LINC00470 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with LINC00470: view

No data available for Pathways by source and SIGNOR curated interactions for LINC00470 Gene

Drugs & Compounds for LINC00470 Gene

No Compound Related Data Available

Transcripts for LINC00470 Gene

mRNA/cDNA for LINC00470 Gene

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00470

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00470 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b
SP1: - -
SP2:

Relevant External Links for LINC00470 Gene

GeneLoc Exon Structure for
LINC00470

Expression for LINC00470 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00470 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00470 Gene

This gene is overexpressed in Testis (x21.1) and Liver (x4.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00470

SOURCE GeneReport for Unigene cluster for LINC00470 Gene:

Hs.541165

mRNA Expression by UniProt/SwissProt for LINC00470 Gene:

Q9BZP3-CR002_HUMAN
Tissue specificity: Retina-specific.
genes like me logo Genes that share expression patterns with LINC00470: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00470 Gene

Orthologs for LINC00470 Gene

Evolution for LINC00470 Gene

ENSEMBL:
Gene Tree for LINC00470 (if available)
TreeFam:
Gene Tree for LINC00470 (if available)

No data available for Orthologs for LINC00470 Gene

Paralogs for LINC00470 Gene

No data available for Paralogs for LINC00470 Gene

Variants for LINC00470 Gene

Additional dbSNP identifiers (rs#s) for LINC00470 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00470 Gene

Variant ID Type Subtype PubMed ID
dgv3309n100 CNV gain 25217958
dgv5810n54 CNV gain 21841781
dgv5811n54 CNV gain 21841781
esv2675696 CNV deletion 23128226
esv2716664 CNV deletion 23290073
esv3554948 CNV deletion 23714750
esv3582939 CNV loss 25503493
esv3893057 CNV gain 25118596
esv3893058 CNV gain 25118596
nsv1055221 CNV loss 25217958
nsv482935 CNV loss 15286789
nsv528169 CNV loss 19592680
nsv576228 CNV loss 21841781

Additional Variant Information for LINC00470 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00470

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00470 Gene

Disorders for LINC00470 Gene

Additional Disease Information for LINC00470

No disorders were found for LINC00470 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00470 Gene

Publications for LINC00470 Gene

  1. EST mining of the UniGene dataset to identify retina-specific genes. (PMID: 11173868) Stöhr H … Weber BH (Cytogenetics and cell genetics 2000) 2 3 4 54
  2. A cytoplasmic long noncoding RNA LINC00470 as a new AKT activator to mediate glioblastoma cell autophagy. (PMID: 29866190) Liu C … Wu M (Journal of hematology & oncology 2018) 2 3 54
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for LINC00470 Gene

Sources for LINC00470 Gene