Aliases for LINC00469 Gene

Subcategory (RNA class) for LINC00469 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00469 Gene

  • Long Intergenic Non-Protein Coding RNA 469 2 3 5
  • LINC00469 2 5 165
  • C17orf54 3 4
  • Putative Uncharacterized Protein Encoded By LINC00469 4
  • Chromosome 17 Open Reading Frame 54 2
  • NONHSAG022681.2 91
  • HSALNG0118604 164
  • FLJ40319 2

External Ids for LINC00469 Gene

Previous HGNC Symbols for LINC00469 Gene

  • C17orf54

Previous GeneCards Identifiers for LINC00469 Gene

  • GC17M071746

Summaries for LINC00469 Gene

GeneCards Summary for LINC00469 Gene

LINC00469 (Long Intergenic Non-Protein Coding RNA 469) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00469 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00469 Gene

Genomics for LINC00469 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00469 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J073826 Promoter/Enhancer 0.9 Ensembl ENCODE 600.7 +1.0 995 2.7 ZNF7 TARDBP FOXA1 ZIC2 CTBP1 ZNF217 GATA3 DPF2 KLF17 ZNF687 LINC00469 C17orf80 FAM104A MN309174-285 SDK2 RPL38
GH17J073796 Enhancer 1.1 Ensembl ENCODE 12 +29.5 29537 4.4 HNRNPL GATAD2A ATF7 REST TFE3 SOX13 NFKBIZ RCOR2 RBFOX2 RXRB NAT9 LINC00469 MN309174-285 LINC02092 SDK2 RPL38
GH17J073770 Enhancer 1 Ensembl ENCODE 11.5 +57.2 57236 3.4 CREB1 ATF7 PRDM10 ZNF629 ZNF692 JUND PRDM1 ZIC2 ZNF776 PATZ1 LINC00469 lnc-RPL38-5 lnc-SDK2-7 SDK2 RPL38
GH17J073784 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 11.8 +42.2 42236 4.2 CREB1 ZNF629 RFX1 SCRT2 RAD21 BMI1 TAL1 ZNF652 CBFA2T3 LINC02092 LINC00469 lnc-RPL38-5 SDK2 RPL38
GH17J073616 Enhancer 0.9 ENCODE CraniofacialAtlas dbSUPER 10.8 +211.6 211575 2.2 ZIC2 CEBPA MNT ZNF282 WT1 ZFHX2 PAX8 ZNF687 GLIS1 ZNF398 SDK2 LINC00469 HQ292101 piR-31199-145 CDC42EP4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00469 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00469 Gene

Genomic Locations for LINC00469 Gene
chr17:73,749,270-73,828,537
(GRCh38/hg38)
Size:
79,268 bases
Orientation:
Minus strand
chr17:71,745,409-71,824,676
(GRCh37/hg19)
Size:
79,268 bases
Orientation:
Minus strand

Genomic View for LINC00469 Gene

Genes around LINC00469 on UCSC Golden Path with GeneCards custom track
LINC00469 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00469 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00469 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00469 Gene

Proteins for LINC00469 Gene

  • Protein details for LINC00469 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N7U9-CQ054_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00469
    Protein Accession:
    Q8N7U9
    Secondary Accessions:
    • Q495E4

    Protein attributes for LINC00469 Gene

    Size:
    141 amino acids
    Molecular mass:
    15976 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for LINC00469 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for LINC00469 Gene

Post-translational modifications for LINC00469 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for LINC00469 Gene

Domains & Families for LINC00469 Gene

Gene Families for LINC00469 Gene

Protein Domains for LINC00469 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for LINC00469 Gene

GenScript: Design optimal peptide antigens:
  • C17orf54 protein (A4QMQ2_HUMAN)
genes like me logo Genes that share domains with LINC00469: view

No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00469 Gene

Function for LINC00469 Gene

Phenotypes From GWAS Catalog for LINC00469 Gene

genes like me logo Genes that share phenotypes with LINC00469: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00469

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00469 Gene

Localization for LINC00469 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00469 Gene

Pathways & Interactions for LINC00469 Gene

PathCards logo

SuperPathways for LINC00469 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00469 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00469 Gene

Drugs & Compounds for LINC00469 Gene

No Compound Related Data Available

Transcripts for LINC00469 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00469 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A883_9606 lncRNA 1549 4

HGNC: 26863,

RefSeq: NR_027146,

LNCipedia: LINC00469:1,

NONCODE: NONHSAT055739.2,

URS00003E97DE_9606 lncRNA 708 3

Ensembl: ENST00000321800 (view in UCSC) ,

LNCipedia: LINC00469:2,

NONCODE: NONHSAT055741.2,

URS0000060DED_9606 lncRNA 583 3

Ensembl: ENST00000579749 (view in UCSC) ,

LNCipedia: LINC00469:5,

NONCODE: NONHSAT055742.2,

URS0000401808_9606 lncRNA 472 2

Ensembl: ENST00000544677 (view in UCSC) ,

LNCipedia: LINC00469:3,

URS0000EEFBCD_9606 lncRNA 1256 1

Ensembl: ENST00000665734 (view in UCSC) ,

LINC00469 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00469 Gene

1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00469

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00469 Gene

No ASD Table

Relevant External Links for LINC00469 Gene

GeneLoc Exon Structure for
LINC00469

Expression for LINC00469 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00469 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00469 Gene

This gene is overexpressed in Lung (x23.2), Spleen (x19.9), Whole Blood (x5.6), and Testis (x4.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00469

SOURCE GeneReport for Unigene cluster for LINC00469 Gene:

Hs.464079
genes like me logo Genes that share expression patterns with LINC00469: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00469 Gene

Orthologs for LINC00469 Gene

Evolution for LINC00469 Gene

ENSEMBL:
Gene Tree for LINC00469 (if available)
TreeFam:
Gene Tree for LINC00469 (if available)

No data available for Orthologs for LINC00469 Gene

Paralogs for LINC00469 Gene

(1) SIMAP similar genes for LINC00469 Gene using alignment to 1 proteins:

  • CQ054_HUMAN
genes like me logo Genes that share paralogs with LINC00469: view

No data available for Paralogs for LINC00469 Gene

Variants for LINC00469 Gene

Additional dbSNP identifiers (rs#s) for LINC00469 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00469 Gene

Variant ID Type Subtype PubMed ID
dgv12e196 CNV duplication 17116639
dgv3281n100 CNV loss 25217958
dgv3282n100 CNV gain 25217958
dgv372n27 CNV gain 19166990
dgv566e199 CNV deletion 23128226
dgv5768n54 CNV gain 21841781
esv2274431 CNV deletion 18987734
esv2422139 CNV deletion 20811451
esv2660277 CNV deletion 23128226
esv2716208 CNV deletion 23290073
esv2758703 CNV loss 17122850
esv2760453 CNV loss 21179565
esv2761976 CNV loss 21179565
esv3573820 CNV gain 25503493
esv3582906 CNV loss 25503493
esv3641225 CNV loss 21293372
esv3641226 CNV gain 21293372
esv3641227 CNV loss 21293372
nsv1066417 CNV loss 25217958
nsv1066622 CNV loss 25217958
nsv1067421 CNV loss 25217958
nsv442425 CNV loss 18776908
nsv522548 CNV gain 19592680
nsv527318 CNV loss 19592680
nsv527584 CNV loss 19592680
nsv528478 CNV loss 19592680
nsv575988 CNV loss 21841781
nsv819477 CNV loss 19587683
nsv952364 CNV deletion 24416366
nsv952365 CNV duplication 24416366

Additional Variant Information for LINC00469 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00469

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00469 Gene

Disorders for LINC00469 Gene

No disorders were found for LINC00469 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00469 Gene

Publications for LINC00469 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  3. Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. (PMID: 23382691) Lauc G … Rudan I (PLoS genetics 2013) 3
  4. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody MC … Nusbaum C (Nature 2006) 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC00469 Gene

Sources for LINC00469 Gene