Aliases for LINC00467 Gene

Subcategory (RNA class) for LINC00467 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00467 Gene

  • Long Intergenic Non-Protein Coding RNA 467 2 3 5
  • LINC00467 2 168
  • Chromosome 1 Open Reading Frame 97 2
  • HSALNG0010286 167
  • NONHSAG004197 92
  • C1orf97 3

External Ids for LINC00467 Gene

Previous HGNC Symbols for LINC00467 Gene

  • C1orf97

Previous GeneCards Identifiers for LINC00467 Gene

  • GC01P211557

Summaries for LINC00467 Gene

GeneCards Summary for LINC00467 Gene

LINC00467 (Long Intergenic Non-Protein Coding RNA 467) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00467 include Neuroblastoma.

Additional gene information for LINC00467 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00467 Gene

Genomics for LINC00467 Gene

GeneHancer (GH) Regulatory Elements for LINC00467 Gene

Promoters and enhancers for LINC00467 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J211381 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 512.4 +0.2 165 2.6 ZBTB40 NRF1 POLR2G GTF2E2 PHF8 ZBTB5 POLR2A ZBTB10 CLOCK ZBTB11 LINC00467 ENSG00000287033 TRAF5 RCOR3 RPL21P28 ENSG00000229832 lnc-RD3-5
GH01J211326 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 17.6 -54.3 -54303 4.5 ZSCAN5C SIN3A NRF1 USF1 PHF8 ZFX ZIC2 POLR2A CLOCK AFF1 TRAF5 LINC00467 PPP2R5A lnc-RD3-1
GH01J211256 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas 16.4 -123.4 -123425 5.4 HNRNPK EP300 CTCF SIN3A NRF1 MYC POLR2G USF1 SP1 GTF2E2 RCOR3 LOC105372902 lnc-KCNH1-2 LINC00467 HHAT HE856179
GH01J211416 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas 18.8 +34.0 33987 1.8 ZFX SKI KMT2B CTCF NFIC ZBTB17 MEF2B SMARCA5 ZNF213 SIN3A SNX25P1 LINC00467 piR-43103-006
GH01J211371 Enhancer 1.1 Ensembl ENCODE dbSUPER 21.1 -11.1 -11135 1.6 TCF12 JUND CTBP1 NFRKB NFIC ARNT FOS FOSL2 ZNF592 RBBP5 LINC00467 RCOR3 lnc-RD3-1 TRAF5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00467 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00467 Gene

Genomic Locations for LINC00467 Gene
chr1:211,382,736-211,444,093
(GRCh38/hg38)
Size:
61,358 bases
Orientation:
Plus strand
chr1:211,556,097-211,605,878
(GRCh37/hg19)
Size:
49,782 bases
Orientation:
Plus strand

Genomic View for LINC00467 Gene

Genes around LINC00467 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00467 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00467 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00467 Gene

Proteins for LINC00467 Gene

Post-translational modifications for LINC00467 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00467 Gene

Domains & Families for LINC00467 Gene

Gene Families for LINC00467 Gene

genes like me logo Genes that share domains with LINC00467: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00467 Gene

Function for LINC00467 Gene

Phenotypes From GWAS Catalog for LINC00467 Gene

Phenotypes for LINC00467 Gene

genes like me logo Genes that share phenotypes with LINC00467: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00467

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00467 Gene

Localization for LINC00467 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00467 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00467 Gene

Pathways & Interactions for LINC00467 Gene

PathCards logo

SuperPathways for LINC00467 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00467 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00467 Gene

Drugs & Compounds for LINC00467 Gene

No Compound Related Data Available

Transcripts for LINC00467 Gene

mRNA/cDNA for LINC00467 Gene

48 RNACentral transcripts :
2 REFSEQ mRNAs :
5 NCBI additional mRNA sequence :
27 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
9 NONCODE transcripts :
13 LncBook transcripts :
22 LNCipedia transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00467

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00467 Gene

No ASD Table

Relevant External Links for LINC00467 Gene

GeneLoc Exon Structure for
LINC00467

Expression for LINC00467 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00467 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00467 Gene

This gene is overexpressed in Testis (x33.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00467

SOURCE GeneReport for Unigene cluster for LINC00467 Gene:

Hs.523932
genes like me logo Genes that share expression patterns with LINC00467: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00467 Gene

Orthologs for LINC00467 Gene

Evolution for LINC00467 Gene

ENSEMBL:
Gene Tree for LINC00467 (if available)
TreeFam:
Gene Tree for LINC00467 (if available)

No data available for Orthologs for LINC00467 Gene

Paralogs for LINC00467 Gene

No data available for Paralogs for LINC00467 Gene

Variants for LINC00467 Gene

Additional dbSNP identifiers (rs#s) for LINC00467 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00467 Gene

Variant ID Type Subtype PubMed ID
esv2722384 CNV deletion 23290073
esv2762141 CNV loss 21179565
esv3588731 CNV loss 21293372

Additional Variant Information for LINC00467 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00467

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00467 Gene

Disorders for LINC00467 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00467 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
neuroblastoma
  • nb
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00467

genes like me logo Genes that share disorders with LINC00467: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00467 Gene

Publications for LINC00467 Gene

  1. The novel long noncoding RNA linc00467 promotes cell survival but is down-regulated by N-Myc. (PMID: 24586304) Atmadibrata B … Liu T (PloS one 2014) 2 3 54
  2. Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. (PMID: 28611215) Fei T … Brown M (Proceedings of the National Academy of Sciences of the United States of America 2017) 3 54
  3. Association between genetic variants in VEGF, ERCC3 and occupational benzene haematotoxicity. (PMID: 19773279) Hosgood HD … Lan Q (Occupational and environmental medicine 2009) 3 54
  4. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 54
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 54

Products for LINC00467 Gene

Sources for LINC00467 Gene