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Aliases for LINC00466 Gene
Subcategory (RNA class) for LINC00466 Gene
lncRNA
Aliases for LINC00466 Gene
External Ids for LINC00466 Gene
- HGNC: 27294
- NCBI Entrez Gene: 199899
- Ensembl: ENSG00000224209
Previous GeneCards Identifiers for LINC00466 Gene
- GC01U903291
- GC01M063625
- GC01M063628
- GC01M063631
Summaries for LINC00466 Gene
GeneCards Summary for LINC00466 Gene
LINC00466 (Long Intergenic Non-Protein Coding RNA 466) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC00466 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00466 Gene
Genomics for LINC00466 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC00466 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC00466 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC00466 Gene
Latest Assembly
- chr1:63,159,035-63,317,328
- (GRCh38/hg38)
- Size:
- 158,294 bases
- Orientation:
- Minus strand
Previous Assembly
- chr1:63,624,754-63,782,928
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 158,175 bases
- Orientation:
- Minus strand
- chr1:63,655,660-63,782,902
- (GRCh37/hg19 by Ensembl)
- Size:
- 127,243 bases
- Orientation:
- Minus strand
Genomic View for LINC00466 Gene
Genes around LINC00466 on UCSC Golden Path with GeneCards custom track
LINC00466 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 1p31.3 by HGNC
- 1p31.3 by Entrez Gene
- 1p31.3 by Ensembl
LINC00466 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC00466 Gene
Proteins for LINC00466 Gene
Post-translational modifications for LINC00466 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC00466 Gene
Domains & Families for LINC00466 Gene
Gene Families for LINC00466 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00466 Gene
Function for LINC00466 Gene
Phenotypes From GWAS Catalog for LINC00466 Gene
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for LINC00466 - Starting at $85 >
- * LINC00466 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
- Applied Biological Materials (abm): Clones for LINC00466 - Starting at $45 >
- * LINC00466 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00466 Gene
Localization for LINC00466 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00466 Gene
Transcripts for LINC00466 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00466 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00005159B4_9606 | lncRNA | 1103 | 4 |
Ensembl: ENST00000455304 (view in UCSC) , LncBook: HSALNT0008122, LNCipedia: LINC00466:9, NONCODE: NONHSAT003658.2, |
| URS000048DFD2_9606 | lncRNA | 403 | 4 |
Ensembl: ENST00000418086 (view in UCSC) , LncBook: HSALNT0008127, LNCipedia: LINC00466:13, NONCODE: NONHSAT003660.2, |
| URS0000AAFD97_9606 | lncRNA | 1736 | 3 |
Ensembl: ENST00000634725 (view in UCSC) , LncBook: HSALNT0008108, LNCipedia: LINC00466:3, |
| URS0000A95980_9606 | lncRNA | 1565 | 3 |
Ensembl: ENST00000635458 (view in UCSC) , LncBook: HSALNT0008105, LNCipedia: LINC00466:7, |
| URS0000A8DAFE_9606 | lncRNA | 1279 | 3 |
Ensembl: ENST00000634576 (view in UCSC) , LncBook: HSALNT0008119, LNCipedia: LINC00466:10, |
LINC00466 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC00466 Gene
- 2 NCBI additional mRNA sequence :
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000432537 434 nts (view in UCSC)
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for LINC00466 - Starting at $85 >
- * LINC00466 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
- Applied Biological Materials (abm): Clones for LINC00466 - Starting at $45 >
- * LINC00466 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Relevant External Links for LINC00466 Gene
- GeneLoc Exon Structure for
- LINC00466
Expression for LINC00466 Gene
mRNA differential expression in normal tissues according to GTEx for LINC00466 Gene
This gene is overexpressed in Testis (x44.6).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00466
SOURCE GeneReport for Unigene cluster for LINC00466 Gene:
Hs.116210Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00466 Gene
Orthologs for LINC00466 Gene
No data available for Orthologs for LINC00466 Gene
Paralogs for LINC00466 Gene
No data available for Paralogs for LINC00466 Gene
Variants for LINC00466 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv1000281 | CNV | deletion | 20482838 |
| esv1006508 | CNV | deletion | 20482838 |
| esv1348268 | CNV | deletion | 17803354 |
| esv21673 | CNV | loss | 19812545 |
| esv2657136 | CNV | deletion | 23128226 |
| esv2749030 | CNV | deletion | 23290073 |
| esv2852013 | CNV | deletion | 24192839 |
| esv3563081 | CNV | deletion | 23714750 |
| esv3577902 | CNV | loss | 25503493 |
| esv5933 | CNV | loss | 19470904 |
| nsv1077367 | CNV | deletion | 25765185 |
| nsv1113125 | CNV | deletion | 24896259 |
| nsv1113126 | CNV | deletion | 24896259 |
| nsv461672 | CNV | gain | 19166990 |
| nsv470714 | CNV | gain | 18288195 |
| nsv511695 | CNV | loss | 21212237 |
| nsv546433 | CNV | gain | 21841781 |
| nsv823065 | CNV | gain | 20364138 |
| nsv945975 | CNV | duplication | 23825009 |
| nsv956621 | CNV | deletion | 24416366 |
Additional Variant Information for LINC00466 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC00466
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00466 Gene
Disorders for LINC00466 Gene
Additional Disease Information for LINC00466
No disorders were found for LINC00466 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00466 Gene
Publications for LINC00466 Gene
- Tumor-Promoting Activity of Long Noncoding RNA LINC00466 in Lung Adenocarcinoma via miR-144-Regulated HOXA10 Axis. (PMID: 31381886) Ma T … Yan B (The American journal of pathology 2019) 2 3
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
Products for LINC00466 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC00466
- Origene Custom Protein Services for LINC00466
- Browse OriGene Inhibitory RNA Products For LINC00466
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC00466
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC00466
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC00466
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC00466
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC00466
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC00466
Sources for LINC00466 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB