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LINC00466 (Long Intergenic Non-Protein Coding RNA 466) is an RNA Gene, and is affiliated with the lncRNA class.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH01J063316 | Promoter/Enhancer | 1.2 | Ensembl ENCODE | 605.4 | -0.3 | -281 | 2.8 | CTCF PRDM10 ZNF629 JUND ZIC2 POLR2A PATZ1 REST ZNF501 EZH2 | LINC00466 ITGB3BP USP1 FOXD3 ATG4C | |
GH01J063294 | Enhancer | 0.9 | Ensembl ENCODE dbSUPER | 12.3 | +22.0 | 21989 | 2.2 | TEAD4 POLR2A ETS1 SIN3A NANOG SP1 CEBPB POU5F1 JUND | LINC00466 FOXD3 FOXD3-AS1 ENSG00000236674 ALG6 piR-52966-001 ATG4C | |
GH01J063319 | Enhancer | 0.4 | FANTOM5 | 0.7 | -2.5 | -2455 | 0.1 | POLR2A EZH2 CHD1 ZBTB33 | FOXD3 FOXD3-AS1 LINC00466 ATG4C | |
GH01J063305 | Enhancer | 0.5 | Ensembl dbSUPER | 0.4 | +12.1 | 12083 | 0.8 | NANOG POU5F1 | LINC00466 FOXD3 piR-52966-001 ATG4C | |
GH01J063274 | Enhancer | 0.8 | UCNEbase Ensembl | 0.3 | +42.2 | 42173 | 0.6 | PRDM1 ZBTB1 PRDM4 PRDM6 | piR-52966-001 LINC00466 FOXD3 ATG4C |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS00005159B4_9606 | lncRNA | 1098 | 4 |
Ensembl: ENST00000455304 (view in UCSC) , LncBook: HSALNT0008122, LNCipedia: LINC00466:9, NONCODE: NONHSAT003658.2, |
URS000048DFD2_9606 | lncRNA | 403 | 4 |
Ensembl: ENST00000418086 (view in UCSC) , LncBook: HSALNT0008127, LNCipedia: LINC00466:13, NONCODE: NONHSAT003660.2, |
URS0000ABD88D_9606 | lncRNA | 1820 | 3 |
HGNC: 27294, RefSeq: NR_038252, LNCipedia: LINC00466:26, |
URS0000AAFD97_9606 | lncRNA | 1736 | 3 |
Ensembl: ENST00000634725 (view in UCSC) , LncBook: HSALNT0008108, LNCipedia: LINC00466:3, |
URS0000A95980_9606 | lncRNA | 1554 | 3 |
Ensembl: ENST00000635458 (view in UCSC) , LncBook: HSALNT0008105, LNCipedia: LINC00466:7, |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
esv1000281 | CNV | deletion | 20482838 |
esv1006508 | CNV | deletion | 20482838 |
esv1348268 | CNV | deletion | 17803354 |
esv21673 | CNV | loss | 19812545 |
esv2657136 | CNV | deletion | 23128226 |
esv2749030 | CNV | deletion | 23290073 |
esv2852013 | CNV | deletion | 24192839 |
esv3563081 | CNV | deletion | 23714750 |
esv3577902 | CNV | loss | 25503493 |
esv5933 | CNV | loss | 19470904 |
nsv1077367 | CNV | deletion | 25765185 |
nsv1113125 | CNV | deletion | 24896259 |
nsv1113126 | CNV | deletion | 24896259 |
nsv461672 | CNV | gain | 19166990 |
nsv470714 | CNV | gain | 18288195 |
nsv511695 | CNV | loss | 21212237 |
nsv546433 | CNV | gain | 21841781 |
nsv823065 | CNV | gain | 20364138 |
nsv945975 | CNV | duplication | 23825009 |
nsv956621 | CNV | deletion | 24416366 |
No disorders were found for LINC00466 Gene.