LINC00466 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 466

GC01M063160
GIFtS:
14
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Aliases for LINC00466 Gene

Subcategory (RNA class) for LINC00466 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00466 Gene

  • Long Intergenic Non-Protein Coding RNA 466 2 3 5
  • LINC00466 2 5 165
  • NONHSAG001692.2 91
  • HSALNG0004105 164

External Ids for LINC00466 Gene

Previous GeneCards Identifiers for LINC00466 Gene

  • GC01U903291
  • GC01M063625
  • GC01M063628
  • GC01M063631

Summaries for LINC00466 Gene

GeneCards Summary for LINC00466 Gene

LINC00466 (Long Intergenic Non-Protein Coding RNA 466) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00466 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00466 Gene

Genomics for LINC00466 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC00466 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J063316 Promoter/Enhancer 1.2 Ensembl ENCODE 605.4 -0.3 -281 2.8 CTCF PRDM10 ZNF629 JUND ZIC2 POLR2A PATZ1 REST ZNF501 EZH2 LINC00466 ITGB3BP USP1 FOXD3 ATG4C
GH01J063294 Enhancer 0.9 Ensembl ENCODE dbSUPER 12.3 +22.0 21989 2.2 TEAD4 POLR2A ETS1 SIN3A NANOG SP1 CEBPB POU5F1 JUND LINC00466 FOXD3 FOXD3-AS1 ENSG00000236674 ALG6 piR-52966-001 ATG4C
GH01J063319 Enhancer 0.4 FANTOM5 0.7 -2.5 -2455 0.1 POLR2A EZH2 CHD1 ZBTB33 FOXD3 FOXD3-AS1 LINC00466 ATG4C
GH01J063305 Enhancer 0.5 Ensembl dbSUPER 0.4 +12.1 12083 0.8 NANOG POU5F1 LINC00466 FOXD3 piR-52966-001 ATG4C
GH01J063274 Enhancer 0.8 UCNEbase Ensembl 0.3 +42.2 42173 0.6 PRDM1 ZBTB1 PRDM4 PRDM6 piR-52966-001 LINC00466 FOXD3 ATG4C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00466 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00466 Gene

Genomic Locations for LINC00466 Gene
chr1:63,159,036-63,317,284
(GRCh38/hg38)
Size:
158,249 bases
Orientation:
Minus strand
chr1:63,624,754-63,782,902
(GRCh37/hg19)
Size:
158,149 bases
Orientation:
Minus strand

Genomic View for LINC00466 Gene

Genes around LINC00466 on UCSC Golden Path with GeneCards custom track
LINC00466 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00466 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00466 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC00466 Gene

Proteins for LINC00466 Gene

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Post-translational modifications for LINC00466 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00466 Gene

Domains & Families for LINC00466 Gene

Gene Families for LINC00466 Gene

HGNC:
genes like me logo Genes that share domains with LINC00466: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00466 Gene

Function for LINC00466 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC00466 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00466 Gene

Localization for LINC00466 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00466 Gene

Pathways & Interactions for LINC00466 Gene

PathCards logo

SuperPathways for LINC00466 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00466 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00466 Gene

Drugs & Compounds for LINC00466 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LINC00466 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00466 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005159B4_9606 lncRNA 1098 4

Ensembl: ENST00000455304 (view in UCSC) ,

LncBook: HSALNT0008122,

LNCipedia: LINC00466:9,

NONCODE: NONHSAT003658.2,

URS000048DFD2_9606 lncRNA 403 4

Ensembl: ENST00000418086 (view in UCSC) ,

LncBook: HSALNT0008127,

LNCipedia: LINC00466:13,

NONCODE: NONHSAT003660.2,

URS0000ABD88D_9606 lncRNA 1820 3

HGNC: 27294,

RefSeq: NR_038252,

LNCipedia: LINC00466:26,

URS0000AAFD97_9606 lncRNA 1736 3

Ensembl: ENST00000634725 (view in UCSC) ,

LncBook: HSALNT0008108,

LNCipedia: LINC00466:3,

URS0000A95980_9606 lncRNA 1554 3

Ensembl: ENST00000635458 (view in UCSC) ,

LncBook: HSALNT0008105,

LNCipedia: LINC00466:7,

LINC00466 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00466 Gene

2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00466 Gene

No ASD Table

Relevant External Links for LINC00466 Gene

GeneLoc Exon Structure for
LINC00466

Expression for LINC00466 Gene

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mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00466 Gene

mRNA expression in normal human tissues for LINC00466 Gene
mRNA expression by GTEx for LINC00466 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00466 Gene

This gene is overexpressed in Testis (x44.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00466

SOURCE GeneReport for Unigene cluster for LINC00466 Gene:

Hs.116210
genes like me logo Genes that share expression patterns with LINC00466: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00466 Gene

Orthologs for LINC00466 Gene

Evolution for LINC00466 Gene

ENSEMBL:
Gene Tree for LINC00466 (if available)
TreeFam:
Gene Tree for LINC00466 (if available)

No data available for Orthologs for LINC00466 Gene

Paralogs for LINC00466 Gene

No data available for Paralogs for LINC00466 Gene

Variants for LINC00466 Gene

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Additional dbSNP identifiers (rs#s) for LINC00466 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00466 Gene

Variant ID Type Subtype PubMed ID
esv1000281 CNV deletion 20482838
esv1006508 CNV deletion 20482838
esv1348268 CNV deletion 17803354
esv21673 CNV loss 19812545
esv2657136 CNV deletion 23128226
esv2749030 CNV deletion 23290073
esv2852013 CNV deletion 24192839
esv3563081 CNV deletion 23714750
esv3577902 CNV loss 25503493
esv5933 CNV loss 19470904
nsv1077367 CNV deletion 25765185
nsv1113125 CNV deletion 24896259
nsv1113126 CNV deletion 24896259
nsv461672 CNV gain 19166990
nsv470714 CNV gain 18288195
nsv511695 CNV loss 21212237
nsv546433 CNV gain 21841781
nsv823065 CNV gain 20364138
nsv945975 CNV duplication 23825009
nsv956621 CNV deletion 24416366

Additional Variant Information for LINC00466 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00466

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00466 Gene

Disorders for LINC00466 Gene

Additional Disease Information for LINC00466

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC00466 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00466 Gene

Publications for LINC00466 Gene

  1. Tumor-Promoting Activity of Long Noncoding RNA LINC00466 in Lung Adenocarcinoma via miR-144-Regulated HOXA10 Axis. (PMID: 31381886) Ma T … Yan B (The American journal of pathology 2019) 2 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

ExternalLinks

View latest publications for LINC00466 gene in Mastermind

Products for LINC00466 Gene

Sources for LINC00466 Gene