Aliases for LINC00462 Gene

Subcategory (RNA class) for LINC00462 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00462 Gene

  • Long Intergenic Non-Protein Coding RNA 462 2 3 5
  • LINC00462 2 5 165
  • NONHSAG013485.2 91
  • HSALNG0097004 164

External Ids for LINC00462 Gene

Previous GeneCards Identifiers for LINC00462 Gene

  • GC00U932996
  • GC13M049153
  • GC13M049141

Summaries for LINC00462 Gene

GeneCards Summary for LINC00462 Gene

LINC00462 (Long Intergenic Non-Protein Coding RNA 462) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00462 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00462 Gene

Genomics for LINC00462 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00462 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J048577 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 610.2 +1.8 1786 2 SP1 BACH1 STAT3 RELA ZNF24 TCF12 IKZF2 CTCF RCOR1 TRIM22 LINC00462 piR-48759-079 RB1 RCBTB2 LPAR6 FNDC3A ITM2B CYSLTR2
GH13J048580 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 600.7 +0.4 421 0.4 CTCF REST RAD21 TRIM22 SMC3 ZNF384 ZNF654 ZNF362 LINC00462 LOC105370202 RB1 RCBTB2 LPAR6 FNDC3A piR-48759-079 CYSLTR2
GH13J048581 Enhancer 0.4 ENCODE dbSUPER 600.7 -1.2 -1153 0.5 EBF1 LINC00462 LOC105370202 RCBTB2 piR-31199-086 CYSLTR2 RB1
GH13J048582 Enhancer 0.3 FANTOM5 610.1 -0.2 -186 0.3 LINC00462 LOC105370202 CYSLTR2 RCBTB2 RB1
GH13J048530 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10 +48.2 48229 3.7 CREB1 PRDM10 ZNF629 TFE3 IKZF1 ZNF692 POLR2A BACH1 ZIC2 RBFOX2 RCBTB2 ENSG00000274929 ENSG00000287599 lnc-CYSLTR2-3 LINC00462 RB1 LPAR6 lnc-RCBTB2-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00462 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00462 Gene

Genomic Locations for LINC00462 Gene
chr13:48,576,974-48,580,901
(GRCh38/hg38)
Size:
3,928 bases
Orientation:
Minus strand
chr13:49,141,734-49,164,687
(GRCh37/hg19)
Size:
22,954 bases
Orientation:
Minus strand

Genomic View for LINC00462 Gene

Genes around LINC00462 on UCSC Golden Path with GeneCards custom track
LINC00462 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00462 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00462 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00462 Gene

Proteins for LINC00462 Gene

Post-translational modifications for LINC00462 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00462 Gene

Domains & Families for LINC00462 Gene

Gene Families for LINC00462 Gene

genes like me logo Genes that share domains with LINC00462: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00462 Gene

Function for LINC00462 Gene

Phenotypes From GWAS Catalog for LINC00462 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00462 Gene

Localization for LINC00462 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00462 gene
Compartment Confidence
extracellular 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00462 Gene

Pathways & Interactions for LINC00462 Gene

PathCards logo

SuperPathways for LINC00462 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00462 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00462 Gene

Drugs & Compounds for LINC00462 Gene

No Compound Related Data Available

Transcripts for LINC00462 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00462 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E928_9606 lncRNA 1023 5

HGNC: 42811,

RefSeq: NR_051983,

LncBook: HSALNT0201547,

LNCipedia: LINC00462:1,

NONCODE: NONHSAT033722.2,

URS00004B976E_9606 lncRNA 962 3

Ensembl: ENST00000425350 (view in UCSC) ,

LncBook: HSALNT0201548,

LNCipedia: LINC00462:2,

URS00009BD7B7_9606 lncRNA 962 2

LncBook: HSALNT0201546,

NONCODE: NONHSAT166750.1,

LINC00462 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00462 Gene

2 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00462 Gene

No ASD Table

Relevant External Links for LINC00462 Gene

GeneLoc Exon Structure for
LINC00462

Expression for LINC00462 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00462 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00462 Gene

This gene is overexpressed in Nerve - Tibial (x9.1) and Skin - Sun Exposed (Lower leg) (x5.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00462

SOURCE GeneReport for Unigene cluster for LINC00462 Gene:

Hs.175225
genes like me logo Genes that share expression patterns with LINC00462: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00462 Gene

Orthologs for LINC00462 Gene

Evolution for LINC00462 Gene

ENSEMBL:
Gene Tree for LINC00462 (if available)
TreeFam:
Gene Tree for LINC00462 (if available)

No data available for Orthologs for LINC00462 Gene

Paralogs for LINC00462 Gene

No data available for Paralogs for LINC00462 Gene

Variants for LINC00462 Gene

Additional dbSNP identifiers (rs#s) for LINC00462 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00462 Gene

Variant ID Type Subtype PubMed ID
nsv455881 CNV loss 19166990
nsv561591 CNV loss 21841781
nsv832602 CNV loss 17160897
nsv832604 CNV loss 17160897

Additional Variant Information for LINC00462 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00462

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00462 Gene

Disorders for LINC00462 Gene

No disorders were found for LINC00462 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00462 Gene

Publications for LINC00462 Gene

  1. Long noncoding RNA linc00462 promotes hepatocellular carcinoma progression. (PMID: 28622593) Gong J … Hu Y (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2017) 2 3

Products for LINC00462 Gene

Sources for LINC00462 Gene