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Aliases for LINC00462 Gene

Subcategory (RNA class) for LINC00462 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00462 Gene

  • Long Intergenic Non-Protein Coding RNA 462 2 3 5

External Ids for LINC00462 Gene

Previous GeneCards Identifiers for LINC00462 Gene

  • GC00U932996
  • GC13M049153
  • GC13M049141

Summaries for LINC00462 Gene

GeneCards Summary for LINC00462 Gene

LINC00462 (Long Intergenic Non-Protein Coding RNA 462) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00462 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00462 Gene

Genomics for LINC00462 Gene

GeneHancer (GH) Regulatory Elements for LINC00462 Gene

Promoters and enhancers for LINC00462 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J048577 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 610.2 +1.8 1786 2 SP1 ZNF687 RELA CREM MLLT1 ZBED1 IKZF1 BACH1 IKZF2 CTCF LINC00462 RB1 RCBTB2 LPAR6 FNDC3A ITM2B LINC01077 GC13P048533
GH13J048580 Enhancer 1 FANTOM5 ENCODE dbSUPER 600.7 +0.4 421 0.4 CTCF ZNF384 RAD21 REST TRIM22 SMC3 ZNF654 ZNF362 LOC105370202 LINC00462 RB1 RCBTB2 LPAR6 FNDC3A LINC01077 GC13P048533
GH13J048581 Promoter/Enhancer 1 Ensembl ENCODE dbSUPER 600.7 -1.2 -1192 0.6 EBF1 LOC105370202 LINC00462 RCBTB2 GC13P048533 CYSLTR2 RB1
GH13J048582 Enhancer 0.3 FANTOM5 610.1 -0.2 -186 0.3 LINC00462 LOC105370202 CYSLTR2 GC13P048533 RB1
GH13J048530 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10 +47.9 47900 4.8 ZFX NKRF POLR2A ZNF121 ZNF687 NFIB AHR TFE3 ZBTB7A SP7 RCBTB2 GC13P048533 GC13P048532 ENSG00000274929 LINC00462 RB1 LPAR6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00462 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00462 Gene

Genomic Locations for LINC00462 Gene
chr13:48,576,974-48,580,901
(GRCh38/hg38)
Size:
3,928 bases
Orientation:
Minus strand
chr13:49,141,734-49,164,687
(GRCh37/hg19)
Size:
22,954 bases
Orientation:
Minus strand

Genomic View for LINC00462 Gene

Genes around LINC00462 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00462 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00462 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00462 Gene

Proteins for LINC00462 Gene

Post-translational modifications for LINC00462 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00462 Gene

Domains & Families for LINC00462 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00462 Gene

Function for LINC00462 Gene

Phenotypes From GWAS Catalog for LINC00462 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00462 Gene

Localization for LINC00462 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00462 Gene

Pathways & Interactions for LINC00462 Gene

PathCards logo

SuperPathways for LINC00462 Gene

No Data Available

Interacting Proteins for LINC00462 Gene

Gene Ontology (GO) - Biological Process for LINC00462 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00462 Gene

Drugs & Compounds for LINC00462 Gene

No Compound Related Data Available

Transcripts for LINC00462 Gene

mRNA/cDNA for LINC00462 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Unigene Clusters for LINC00462 Gene

Long intergenic non-protein coding RNA 462:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00462 Gene

No ASD Table

Relevant External Links for LINC00462 Gene

GeneLoc Exon Structure for
LINC00462
ECgene alternative splicing isoforms for
LINC00462

Expression for LINC00462 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00462 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00462 Gene

This gene is overexpressed in Nerve - Tibial (x9.1) and Skin - Sun Exposed (Lower leg) (x5.1).

NURSA nuclear receptor signaling pathways regulating expression of LINC00462 Gene:

LINC00462

SOURCE GeneReport for Unigene cluster for LINC00462 Gene:

Hs.175225
genes like me logo Genes that share expression patterns with LINC00462: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00462 Gene

Orthologs for LINC00462 Gene

Evolution for LINC00462 Gene

ENSEMBL:
Gene Tree for LINC00462 (if available)
TreeFam:
Gene Tree for LINC00462 (if available)

No data available for Orthologs for LINC00462 Gene

Paralogs for LINC00462 Gene

No data available for Paralogs for LINC00462 Gene

Variants for LINC00462 Gene

Sequence variations from dbSNP and Humsavar for LINC00462 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000198998 -- 48,579,259(-) T/C intron_variant
rs1000800154 -- 48,582,052(-) C/A/T upstream_transcript_variant
rs1001125948 -- 48,582,722(-) T/A upstream_transcript_variant
rs1001355525 -- 48,582,417(-) G/T upstream_transcript_variant
rs1002277780 -- 48,577,812(-) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00462 Gene

Variant ID Type Subtype PubMed ID
nsv455881 CNV loss 19166990
nsv561591 CNV loss 21841781
nsv832602 CNV loss 17160897
nsv832604 CNV loss 17160897

Additional Variant Information for LINC00462 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00462

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00462 Gene

Disorders for LINC00462 Gene

Additional Disease Information for LINC00462

No disorders were found for LINC00462 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00462 Gene

Publications for LINC00462 Gene

  1. Long noncoding RNA linc00462 promotes hepatocellular carcinoma progression. (PMID: 28622593) Gong J … Hu Y (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2017) 2 3 58

Products for LINC00462 Gene

Sources for LINC00462 Gene

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