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Aliases for LINC00460 Gene

Subcategory (RNA class) for LINC00460 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00460 Gene

  • Long Intergenic Non-Protein Coding RNA 460 2 3 5

External Ids for LINC00460 Gene

Previous GeneCards Identifiers for LINC00460 Gene

  • GC13P107030

Summaries for LINC00460 Gene

GeneCards Summary for LINC00460 Gene

LINC00460 (Long Intergenic Non-Protein Coding RNA 460) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC00460 include Nasopharyngeal Carcinoma and Esophageal Cancer.

Additional gene information for LINC00460 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00460 Gene

Genomics for LINC00460 Gene

GeneHancer (GH) Regulatory Elements for LINC00460 Gene

Promoters and enhancers for LINC00460 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J106372 Enhancer 1.3 FANTOM5 Ensembl ENCODE 650.7 -0.9 -918 2.6 PKNOX1 FEZF1 SCRT2 ATF7 IKZF2 RUNX3 CREM SMARCA5 CEBPB ZEB2 LINC00460 GC13M106362
GH13J106375 Enhancer 0.7 ENCODE 0.7 +2.2 2214 1.5 CTCF JUN FEZF1 ZIC2 HIC1 ZFHX2 GLIS2 ZNF366 SCRT2 PRDM10 LINC00460 RPL35P9
GH13J106378 Enhancer 0.6 ENCODE 0.7 +4.7 4702 1.1 HIC1 JUND PRDM6 ZNF189 POLR2A ZNF629 FOS ZEB2 LINC00460 RPL35P9
GH13J106380 Enhancer 0.3 ENCODE 0.4 +6.8 6780 0.9 ZNF10 LINC00460 RPL35P9
GH13J106423 Enhancer 0.5 ENCODE 0.2 +49.2 49151 0.2 NR2F1 IKZF1 EBF1 MEF2B RPL35P9 LINC00460
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00460 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00460 Gene

Genomic Locations for LINC00460 Gene
chr13:106,374,477-106,384,315
(GRCh38/hg38)
Size:
9,839 bases
Orientation:
Plus strand
chr13:107,028,911-107,030,565
(GRCh37/hg19)

Genomic View for LINC00460 Gene

Genes around LINC00460 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00460 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00460 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00460 Gene

Proteins for LINC00460 Gene

Post-translational modifications for LINC00460 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00460 Gene

Domains & Families for LINC00460 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00460 Gene

Function for LINC00460 Gene

Phenotypes From GWAS Catalog for LINC00460 Gene

Phenotypes for LINC00460 Gene

genes like me logo Genes that share phenotypes with LINC00460: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00460 Gene

Localization for LINC00460 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00460 Gene

Pathways & Interactions for LINC00460 Gene

SuperPathways for LINC00460 Gene

No Data Available

Interacting Proteins for LINC00460 Gene

Gene Ontology (GO) - Biological Process for LINC00460 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00460 Gene

Drugs & Compounds for LINC00460 Gene

No Compound Related Data Available

Transcripts for LINC00460 Gene

mRNA/cDNA for LINC00460 Gene

(4) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Unigene Clusters for LINC00460 Gene

Long intergenic non-protein coding RNA 460:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00460 Gene

No ASD Table

Relevant External Links for LINC00460 Gene

GeneLoc Exon Structure for
LINC00460
ECgene alternative splicing isoforms for
LINC00460

Expression for LINC00460 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00460 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00460 Gene

This gene is overexpressed in Brain - Caudate (basal ganglia) (x9.1), Brain - Nucleus accumbens (basal ganglia) (x8.5), Brain - Putamen (basal ganglia) (x8.4), Brain - Amygdala (x6.5), Brain - Anterior cingulate cortex (BA24) (x5.1), and Brain - Frontal Cortex (BA9) (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of LINC00460 Gene:

LINC00460

SOURCE GeneReport for Unigene cluster for LINC00460 Gene:

Hs.559194
genes like me logo Genes that share expression patterns with LINC00460: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00460 Gene

Orthologs for LINC00460 Gene

Evolution for LINC00460 Gene

ENSEMBL:
Gene Tree for LINC00460 (if available)
TreeFam:
Gene Tree for LINC00460 (if available)

No data available for Orthologs for LINC00460 Gene

Paralogs for LINC00460 Gene

No data available for Paralogs for LINC00460 Gene

Variants for LINC00460 Gene

Sequence variations from dbSNP and Humsavar for LINC00460 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000346534 -- 106,377,810(+) C/T downstream_transcript_variant
rs1001043351 -- 106,377,486(+) C/A/T non_coding_transcript_variant
rs1001982275 -- 106,374,695(+) C/T upstream_transcript_variant
rs1003566428 -- 106,375,769(+) G/C upstream_transcript_variant
rs1003659827 -- 106,375,613(+) C/G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00460 Gene

Variant ID Type Subtype PubMed ID
esv3633458 CNV gain 21293372
nsv1039628 CNV gain 25217958

Additional Variant Information for LINC00460 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00460

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00460 Gene

Disorders for LINC00460 Gene

MalaCards: The human disease database

(4) MalaCards diseases for LINC00460 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
nasopharyngeal carcinoma
  • npca
esophageal cancer
  • esophageal cancer, somatic
lung cancer
  • lung cancer, susceptibility to
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00460

genes like me logo Genes that share disorders with LINC00460: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00460 Gene

Publications for LINC00460 Gene

  1. Identification of long noncoding RNAs as potential novel diagnosis and prognosis biomarkers in colorectal cancer. (PMID: 27591862) Wang R … Wang C (Journal of cancer research and clinical oncology 2016) 2 3 58
  2. Long non-coding RNA linc00460 promotes epithelial-mesenchymal transition and cell migration in lung cancer cells. (PMID: 29409808) Li K … Peng Y (Cancer letters 2018) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC00460 Gene

Sources for LINC00460 Gene

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