Aliases for LINC00437 Gene

Subcategory (RNA class) for LINC00437 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00437 Gene

  • Long Intergenic Non-Protein Coding RNA 437 2 3 5
  • LINC00437 2 5 165
  • TCONS_00021639 2 3
  • NONHSAG013270.2 91
  • HSALNG0096465 164

External Ids for LINC00437 Gene

Previous GeneCards Identifiers for LINC00437 Gene

  • GC13M039108
  • GC00U935893

Summaries for LINC00437 Gene

GeneCards Summary for LINC00437 Gene

LINC00437 (Long Intergenic Non-Protein Coding RNA 437) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00437 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00437 Gene

Genomics for LINC00437 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00437 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J038685 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.4 -357 3.5 CREB1 CTCF PRDM10 ZNF692 FOXA1 PRDM1 ZIC2 PATZ1 RAD21 POLR2A FREM2 LINC00437 UFM1
GH13J038684 Enhancer 0.6 ENCODE 600.7 +1.7 1736 0.2 TARDBP FOXA1 CTBP1 ZNF217 GATAD2B CUX1 MBD2 SIN3A ESR1 GATA3 LINC00437 FREM2 RF00017-1393 UFM1
GH13J038674 Enhancer 0.5 Ensembl 0.4 +12.3 12274 0.4 SCRT2 CTBP1 OSR2 FOS JUND FOSL2 LINC00437 FREM2 RF00017-1393 UFM1
GH13J038624 Enhancer 0.7 Ensembl ENCODE 0.2 +61.9 61945 1.9 TEAD4 POLR2A USF1 YY1 MYC TAF1 TBP SP1 USF2 POU5F1 PRDX3P3 RF00017-1393 FREM2 LINC00437 UFM1
GH13J038670 Enhancer 0.4 Ensembl 0.4 +15.8 15774 0.2 CTCF ELF1 RAD21 LINC00437 FREM2 RF00017-1393 UFM1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00437 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00437 Gene

Genomic Locations for LINC00437 Gene
chr13:38,532,000-38,686,675
(GRCh38/hg38)
Size:
154,676 bases
Orientation:
Minus strand

Genomic View for LINC00437 Gene

Genes around LINC00437 on UCSC Golden Path with GeneCards custom track
LINC00437 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00437 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00437 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00437 Gene

Proteins for LINC00437 Gene

Post-translational modifications for LINC00437 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00437 Gene

Domains & Families for LINC00437 Gene

Gene Families for LINC00437 Gene

genes like me logo Genes that share domains with LINC00437: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00437 Gene

Function for LINC00437 Gene

Phenotypes From GWAS Catalog for LINC00437 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00437 Gene

Localization for LINC00437 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00437 Gene

Pathways & Interactions for LINC00437 Gene

PathCards logo

SuperPathways for LINC00437 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00437 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00437 Gene

Drugs & Compounds for LINC00437 Gene

No Compound Related Data Available

Transcripts for LINC00437 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00437 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E4311_9606 lncRNA 2359 4

HGNC: 42772,

RefSeq: NR_126377,

LNCipedia: LINC00437:1,

NONCODE: NONHSAT166629.1,

URS00002F9624_9606 lncRNA 791 3

Ensembl: ENST00000414161 (view in UCSC) ,

LncBook: HSALNT0200269,

LNCipedia: LINC00437:2,

URS00008C04CF_9606 lncRNA 2133 2

LNCipedia: LINC00437:3,

NONCODE: NONHSAT033275.2,

LINC00437 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00437 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00437 Gene

No ASD Table

Relevant External Links for LINC00437 Gene

GeneLoc Exon Structure for
LINC00437

Expression for LINC00437 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00437 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00437

genes like me logo Genes that share expression patterns with LINC00437: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00437 Gene

Orthologs for LINC00437 Gene

Evolution for LINC00437 Gene

ENSEMBL:
Gene Tree for LINC00437 (if available)
TreeFam:
Gene Tree for LINC00437 (if available)

No data available for Orthologs for LINC00437 Gene

Paralogs for LINC00437 Gene

No data available for Paralogs for LINC00437 Gene

Variants for LINC00437 Gene

Additional dbSNP identifiers (rs#s) for LINC00437 Gene

Additional Variant Information for LINC00437 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00437

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00437 Gene

Disorders for LINC00437 Gene

Additional Disease Information for LINC00437

No disorders were found for LINC00437 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00437 Gene

Publications for LINC00437 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC00437 Gene

Products for LINC00437 Gene

Sources for LINC00437 Gene