Aliases for LINC00407 Gene

Subcategory (RNA class) for LINC00407 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00407 Gene

  • Long Intergenic Non-Protein Coding RNA 407 2 3 5
  • LINC00407 2 168
  • NONHSAG013395 92
  • HSALNG0096769 167

External Ids for LINC00407 Gene

Previous GeneCards Identifiers for LINC00407 Gene

  • GC13P045226
  • GC00U935788

Summaries for LINC00407 Gene

GeneCards Summary for LINC00407 Gene

LINC00407 (Long Intergenic Non-Protein Coding RNA 407) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00407 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00407 Gene

Genomics for LINC00407 Gene

GeneHancer (GH) Regulatory Elements for LINC00407 Gene

Promoters and enhancers for LINC00407 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J044648 Enhancer 0.9 Ensembl ENCODE 0.4 +8.8 8832 2 CTCF CUX1 WT1 FOXA2 CEBPB RAD21 NANOG IKZF3 IKZF1 SMC3 TSC22D1 LINC00407 piR-33614-076
GH13J044666 Enhancer 0.9 Ensembl ENCODE 0.3 +27.7 27710 3 FOS RELA MEF2C BCL11A NR2F2 MEF2B NR2C1 BATF IRF4 EBF1 TSC22D1 piR-33614-076 LINC00407
GH13J044628 Enhancer 0.6 Ensembl ENCODE 0.4 -10.6 -10568 2.8 JUND NFE2L2 ZNF547 RF01210-099 TSC22D1 LINC00407
GH13J044655 Enhancer 0.6 Ensembl 0.4 +15.3 15332 0.2 ZNF426 ZFHX2 PRDM6 FEZF1 ZNF34 ZC3H11A ZNF781 ZNF518A EGR2 ZNF697 SMARCE1P5 LINC00407 piR-33614-076
GH13J044642 Enhancer 0.3 ENCODE 0.7 +3.2 3179 1.7 ESR1 LINC00407 piR-33614-076
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00407 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00407 Gene

Genomic Locations for LINC00407 Gene
chr13:44,640,369-44,701,017
(GRCh38/hg38)
Size:
60,649 bases
Orientation:
Plus strand

Genomic View for LINC00407 Gene

Genes around LINC00407 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00407 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00407 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00407 Gene

Proteins for LINC00407 Gene

Post-translational modifications for LINC00407 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00407 Gene

Domains & Families for LINC00407 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00407 Gene

Function for LINC00407 Gene

Phenotypes From GWAS Catalog for LINC00407 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00407 Gene

Localization for LINC00407 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00407 Gene

Pathways & Interactions for LINC00407 Gene

PathCards logo

SuperPathways for LINC00407 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00407 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00407 Gene

Drugs & Compounds for LINC00407 Gene

No Compound Related Data Available

Transcripts for LINC00407 Gene

mRNA/cDNA for LINC00407 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00407 Gene

No ASD Table

Relevant External Links for LINC00407 Gene

GeneLoc Exon Structure for
LINC00407

Expression for LINC00407 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00407 Gene

genes like me logo Genes that share expression patterns with LINC00407: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00407 Gene

Orthologs for LINC00407 Gene

Evolution for LINC00407 Gene

ENSEMBL:
Gene Tree for LINC00407 (if available)
TreeFam:
Gene Tree for LINC00407 (if available)

No data available for Orthologs for LINC00407 Gene

Paralogs for LINC00407 Gene

No data available for Paralogs for LINC00407 Gene

Variants for LINC00407 Gene

Additional dbSNP identifiers (rs#s) for LINC00407 Gene

Additional Variant Information for LINC00407 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00407

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00407 Gene

Disorders for LINC00407 Gene

Additional Disease Information for LINC00407

No disorders were found for LINC00407 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00407 Gene

Publications for LINC00407 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 54

No data available for Mastermind for LINC00407 Gene

Products for LINC00407 Gene

Sources for LINC00407 Gene