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Aliases for LINC00346 Gene

Subcategory (RNA class) for LINC00346 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00346 Gene

  • Long Intergenic Non-Protein Coding RNA 346 2 3 5
  • C13orf29 3 4
  • Chromosome 13 Open Reading Frame 29 2
  • Non-Protein Coding RNA 346 2
  • NCRNA00346 3

External Ids for LINC00346 Gene

Previous HGNC Symbols for LINC00346 Gene

  • C13orf29
  • NCRNA00346

Previous GeneCards Identifiers for LINC00346 Gene

  • GC13M111516

Summaries for LINC00346 Gene

GeneCards Summary for LINC00346 Gene

LINC00346 (Long Intergenic Non-Protein Coding RNA 346) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC00346 include Bladder Cancer and Hepatocellular Carcinoma.

Additional gene information for LINC00346 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00346 Gene

Genomics for LINC00346 Gene

GeneHancer (GH) Regulatory Elements for LINC00346 Gene

Promoters and enhancers for LINC00346 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J110868 Promoter/Enhancer 1.6 Ensembl ENCODE 659.7 -0.3 -318 4 PKNOX1 MLX ARNT ARID4B NEUROD1 SIN3A FEZF1 ZNF2 POLR2B ZNF766 LINC00346 GC13M110864 ANKRD10-IT1 CARS2 NAXD GC13P110892
GH13J110963 Enhancer 1.5 Ensembl ENCODE dbSUPER 9.7 -95.5 -95533 5.3 CLOCK IRF4 E2F8 ZNF416 SP3 MEF2D ZNF585B NBN NR2C1 KDM1A LINC00431 NAXD ANKRD10 ANKRD10-IT1 CARS2 LINC00346 ARHGEF7 LOC105370364
GH13J110819 Enhancer 1 Ensembl ENCODE 10.7 +50.8 50807 0.6 RB1 ARID4B SIN3A ZNF2 RAD21 RFX5 ZNF213 ZNF143 BCLAF1 RUNX3 LINC00346 NAXD LOC105370363 LOC105370362
GH13J110873 Enhancer 1.3 FANTOM5 Ensembl ENCODE 5.5 -4.3 -4319 1.7 HDGF PKNOX1 ZNF2 GATA2 KLF7 SP3 SP5 SMARCA4 NBN KDM1A ANKRD10 ING1 CARS2 NAXD RAB20 ANKRD10-IT1 LINC00346 GC13M110864 GC13P110892
GH13J110900 Enhancer 0.5 UCNEbase 11.1 -30.3 -30306 0.3 MITF ANKRD10-IT1 LINC00346 NAXD ANKRD10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00346 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00346 Gene

Genomic Locations for LINC00346 Gene
chr13:110,863,987-110,870,308
(GRCh38/hg38)
Size:
6,322 bases
Orientation:
Minus strand
chr13:111,516,334-111,522,655
(GRCh37/hg19)
Size:
6,322 bases
Orientation:
Minus strand

Genomic View for LINC00346 Gene

Genes around LINC00346 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00346 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00346 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00346 Gene

Proteins for LINC00346 Gene

  • Protein details for LINC00346 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IVM7-CM029_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00346
    Protein Accession:
    Q8IVM7

    Protein attributes for LINC00346 Gene

    Size:
    164 amino acids
    Molecular mass:
    18094 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00346 Gene

Post-translational modifications for LINC00346 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00346 Gene

Domains & Families for LINC00346 Gene

Protein Domains for LINC00346 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00346: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00346 Gene

Function for LINC00346 Gene

Phenotypes From GWAS Catalog for LINC00346 Gene

Phenotypes for LINC00346 Gene

genes like me logo Genes that share phenotypes with LINC00346: view

Animal Model Products

CRISPR Products

miRNA for LINC00346 Gene

miRTarBase miRNAs that target LINC00346

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00346

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LINC00346 Gene

Localization for LINC00346 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00346 Gene

Pathways & Interactions for LINC00346 Gene

SuperPathways for LINC00346 Gene

No Data Available

Interacting Proteins for LINC00346 Gene

Gene Ontology (GO) - Biological Process for LINC00346 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00346 Gene

Drugs & Compounds for LINC00346 Gene

No Compound Related Data Available

Transcripts for LINC00346 Gene

mRNA/cDNA for LINC00346 Gene

(1) REFSEQ mRNAs :
(7) Additional mRNA sequences :
(22) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for LINC00346 Gene

Long intergenic non-protein coding RNA 346:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00346

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00346 Gene

No ASD Table

Relevant External Links for LINC00346 Gene

GeneLoc Exon Structure for
LINC00346
ECgene alternative splicing isoforms for
LINC00346

Expression for LINC00346 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00346 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00346 Gene

This gene is overexpressed in Muscle - Skeletal (x25.3).

NURSA nuclear receptor signaling pathways regulating expression of LINC00346 Gene:

LINC00346

SOURCE GeneReport for Unigene cluster for LINC00346 Gene:

Hs.245390
genes like me logo Genes that share expression patterns with LINC00346: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00346 Gene

Orthologs for LINC00346 Gene

Evolution for LINC00346 Gene

ENSEMBL:
Gene Tree for LINC00346 (if available)
TreeFam:
Gene Tree for LINC00346 (if available)

No data available for Orthologs for LINC00346 Gene

Paralogs for LINC00346 Gene

No data available for Paralogs for LINC00346 Gene

Variants for LINC00346 Gene

Sequence variations from dbSNP and Humsavar for LINC00346 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000102230 -- 110,864,367(-) C/G non_coding_transcript_variant
rs1000536164 -- 110,865,767(-) A/G non_coding_transcript_variant
rs1001431198 -- 110,870,993(-) T/C upstream_transcript_variant
rs1002224275 -- 110,869,276(-) A/G non_coding_transcript_variant
rs1002319135 -- 110,868,935(-) G/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00346 Gene

Variant ID Type Subtype PubMed ID
nsv1044340 CNV gain 25217958

Variation tolerance for LINC00346 Gene

Gene Damage Index Score: 3.85; 58.82% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC00346 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00346

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC00346 Gene

Disorders for LINC00346 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC00346 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
bladder cancer
  • bladder cancer, somatic
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00346

genes like me logo Genes that share disorders with LINC00346: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00346 Gene

Publications for LINC00346 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  2. Long noncoding RNA linc00346 promotes the malignant phenotypes of bladder cancer. (PMID: 28705739) Ye T … Wei A (Biochemical and biophysical research communications 2017) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. Up-regulation of LINC00346 inhibits proliferation of non-small cell lung cancer cells through mediating JAK-STAT3 signaling pathway. (PMID: 29228425) Wang F … Wang XG (European review for medical and pharmacological sciences 2017) 3

Products for LINC00346 Gene

Sources for LINC00346 Gene

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