Aliases for LINC00342 Gene

Subcategory (RNA class) for LINC00342 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00342 Gene

  • Long Intergenic Non-Protein Coding RNA 342 2 3 5
  • LINC00342 2 5 165
  • Non-Protein Coding RNA 342 2
  • NONHSAG028595.2 91
  • HSALNG0016990 164
  • NCRNA00342 3

External Ids for LINC00342 Gene

Previous HGNC Symbols for LINC00342 Gene

  • NCRNA00342

Previous GeneCards Identifiers for LINC00342 Gene

  • GC02M096470

Summaries for LINC00342 Gene

GeneCards Summary for LINC00342 Gene

LINC00342 (Long Intergenic Non-Protein Coding RNA 342) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00342 include Lung Cancer.

Additional gene information for LINC00342 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00342 Gene

Genomics for LINC00342 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00342 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J095814 Promoter 0.3 EPDnew 600.4 +20.2 20221 0.1 piR-50379 LINC00342 lnc-TRIM43-9 ANKRD36C TRIM43
GH02J096526 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.5 -692.9 -692899 2.7 SP1 POLR2A BACH1 JUND LARP7 ZNF143 RELA RCOR1 TRIM22 YY1 ENSG00000230747 ITPRIPL1 GPAT2 SNRNP200 LINC00342 LOC105373496 ARID5A NEURL3
GH02J095320 Enhancer 0.5 ENCODE CraniofacialAtlas 3.6 +513.3 513307 2.9 CTCF SMARCA4 KCNIP3 LINC00342 piR-35179 HSALNG0016949 FAHD2A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00342 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00342 Gene

Genomic Locations for LINC00342 Gene
chr2:95,807,051-95,835,003
(GRCh38/hg38)
Size:
27,953 bases
Orientation:
Minus strand
chr2:96,469,157-96,492,729
(GRCh37/hg19)
Size:
23,573 bases
Orientation:
Minus strand

Genomic View for LINC00342 Gene

Genes around LINC00342 on UCSC Golden Path with GeneCards custom track
LINC00342 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00342 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00342 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00342 Gene

Proteins for LINC00342 Gene

Post-translational modifications for LINC00342 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00342 Gene

Domains & Families for LINC00342 Gene

Gene Families for LINC00342 Gene

genes like me logo Genes that share domains with LINC00342: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00342 Gene

Function for LINC00342 Gene

Phenotypes for LINC00342 Gene

genes like me logo Genes that share phenotypes with LINC00342: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00342 Gene

Localization for LINC00342 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00342 Gene

Pathways & Interactions for LINC00342 Gene

PathCards logo

SuperPathways for LINC00342 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00342 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00342 Gene

Drugs & Compounds for LINC00342 Gene

No Compound Related Data Available

Transcripts for LINC00342 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00342 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075C528_9606 lncRNA 3128 4

HGNC: 42470,

RefSeq: NR_103734,

LNCipedia: LINC00342:1,

NONCODE: NONHSAT072509.2,

URS000020EA70_9606 lncRNA 654 4

Ensembl: ENST00000412393 (view in UCSC) ,

LncBook: HSALNT0035881,

LNCipedia: LINC00342:8,

NONCODE: NONHSAT072511.2,

URS00003D0DAB_9606 lncRNA 2351 2

Ensembl: ENST00000448494 (view in UCSC) ,

LNCipedia: LINC00342:6,

URS0000EEFAC5_9606 lncRNA 4643 1

Ensembl: ENST00000663557 (view in UCSC) ,

URS0000EEC9A0_9606 lncRNA 3318 1

Ensembl: ENST00000660416 (view in UCSC) ,

LINC00342 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00342 Gene

6 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00342 Gene

No ASD Table

Relevant External Links for LINC00342 Gene

GeneLoc Exon Structure for
LINC00342

Expression for LINC00342 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00342 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00342 Gene

This gene is overexpressed in Minor Salivary Gland (x6.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00342

SOURCE GeneReport for Unigene cluster for LINC00342 Gene:

Hs.503463
genes like me logo Genes that share expression patterns with LINC00342: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00342 Gene

Orthologs for LINC00342 Gene

Evolution for LINC00342 Gene

ENSEMBL:
Gene Tree for LINC00342 (if available)
TreeFam:
Gene Tree for LINC00342 (if available)

No data available for Orthologs for LINC00342 Gene

Paralogs for LINC00342 Gene

No data available for Paralogs for LINC00342 Gene

Variants for LINC00342 Gene

Additional dbSNP identifiers (rs#s) for LINC00342 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00342 Gene

Variant ID Type Subtype PubMed ID
esv3575268 CNV gain 25503493
esv3591652 OTHER inversion 21293372
esv3591674 CNV gain 21293372
esv3591675 CNV loss 21293372
nsv1003371 CNV gain 25217958
nsv1004482 CNV gain 25217958
nsv10092 CNV gain 18304495
nsv499420 OTHER inversion 21111241
nsv516044 CNV gain+loss 19592680
nsv7322 OTHER inversion 18451855
nsv834303 CNV gain 17160897
nsv961832 CNV duplication 23825009

Additional Variant Information for LINC00342 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00342

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00342 Gene

Disorders for LINC00342 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00342 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
lung cancer
  • adenocarcinoma of lung
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LINC00342: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00342 Gene

Publications for LINC00342 Gene

  1. LINC00342 regulates cell proliferation, apoptosis, migration and invasion in colon adenocarcinoma via miR-545-5p/MDM2 axis. (PMID: 32213297) Miao Z … Li D (Gene 2020) 3
  2. Long noncoding RNA LINC00342 promotes growth of infantile hemangioma by sponging miR-3619-5p from HDGF. (PMID: 31469292) Liu Z … Wang Y (American journal of physiology. Heart and circulatory physiology 2019) 3
  3. VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC00342 Gene

Sources for LINC00342 Gene