Aliases for LINC00339 Gene

Subcategory (RNA class) for LINC00339 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00339 Gene

  • Long Intergenic Non-Protein Coding RNA 339 2 3 5
  • LINC00339 2 5
  • HSPC157 2 3
  • Non-Protein Coding RNA 339 2
  • NONHSAG000626.2 91
  • HSALNG0001554 164
  • Lnc-CELA3A-5 165
  • NCRNA00339 3

External Ids for LINC00339 Gene

Previous HGNC Symbols for LINC00339 Gene

  • NCRNA00339

Previous GeneCards Identifiers for LINC00339 Gene

  • GC01P022353
  • GC01P022025
  • GC01P022027
  • GC01P022032
  • GC01P022042

Summaries for LINC00339 Gene

GeneCards Summary for LINC00339 Gene

LINC00339 (Long Intergenic Non-Protein Coding RNA 339) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00339 include Pancreatic Ductal Adenocarcinoma and Breast Cancer.

Additional gene information for LINC00339 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00339 Gene

Genomics for LINC00339 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00339 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00339 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00339 Gene

Genomic Locations for LINC00339 Gene
chr1:22,024,531-22,032,311
(GRCh38/hg38)
Size:
7,781 bases
Orientation:
Plus strand
chr1:22,351,681-22,357,716
(GRCh37/hg19)
Size:
6,036 bases
Orientation:
Plus strand

Genomic View for LINC00339 Gene

Genes around LINC00339 on UCSC Golden Path with GeneCards custom track
LINC00339 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00339 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00339 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00339 Gene

Proteins for LINC00339 Gene

Post-translational modifications for LINC00339 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00339 Gene

Domains & Families for LINC00339 Gene

Gene Families for LINC00339 Gene

genes like me logo Genes that share domains with LINC00339: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00339 Gene

Function for LINC00339 Gene

Phenotypes From GWAS Catalog for LINC00339 Gene

Phenotypes for LINC00339 Gene

genes like me logo Genes that share phenotypes with LINC00339: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00339 Gene

Localization for LINC00339 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00339 gene
Compartment Confidence
extracellular 1
cytoskeleton 1
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00339 Gene

Pathways & Interactions for LINC00339 Gene

PathCards logo

SuperPathways for LINC00339 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00339 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00339 Gene

Drugs & Compounds for LINC00339 Gene

No Compound Related Data Available

Transcripts for LINC00339 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00339 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D5F9_9606 lncRNA 1206 5

HGNC: 25011,

RefSeq: NR_109762,

LncBook: HSALNT0002939,

LNCipedia: lnc-CELA3A-5:15,

NONCODE: NONHSAT148504.1,

URS00000839C3_9606 lncRNA 771 4

Ensembl: ENST00000420503 (view in UCSC) ,

LncBook: HSALNT0002948,

LNCipedia: lnc-CELA3A-5:25,

NONCODE: NONHSAT001464.2,

URS000075AE1B_9606 lncRNA 1202 3

RefSeq: NR_109761,

LncBook: HSALNT0002935,

LNCipedia: lnc-CELA3A-5:14,

URS0000759C22_9606 lncRNA 1127 3

RefSeq: NR_023918,

LncBook: HSALNT0002923,

LNCipedia: lnc-CELA3A-5:4,

URS000075E9D1_9606 lncRNA 1085 3

RefSeq: NR_023919,

LncBook: HSALNT0002937,

LNCipedia: lnc-CELA3A-5:12,

LINC00339 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00339 Gene

9 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00339 Gene

No ASD Table

Relevant External Links for LINC00339 Gene

GeneLoc Exon Structure for
LINC00339

Expression for LINC00339 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00339 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00339 Gene

This gene is overexpressed in Pancreas (x7.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00339

SOURCE GeneReport for Unigene cluster for LINC00339 Gene:

Hs.279842
genes like me logo Genes that share expression patterns with LINC00339: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00339 Gene

Orthologs for LINC00339 Gene

Evolution for LINC00339 Gene

ENSEMBL:
Gene Tree for LINC00339 (if available)
TreeFam:
Gene Tree for LINC00339 (if available)

No data available for Orthologs for LINC00339 Gene

Paralogs for LINC00339 Gene

No data available for Paralogs for LINC00339 Gene

Variants for LINC00339 Gene

Additional dbSNP identifiers (rs#s) for LINC00339 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00339 Gene

Variant ID Type Subtype PubMed ID
esv2758927 CNV loss 17122850
esv2764236 CNV gain+loss 21179565
nsv528664 CNV gain 19592680
nsv545745 CNV loss 21841781
nsv834413 CNV loss 17160897

Additional Variant Information for LINC00339 Gene

Human Gene Mutation Database (HGMD)
LINC00339
SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00339

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00339 Gene

Disorders for LINC00339 Gene

MalaCards: The human disease database

(4) MalaCards diseases for LINC00339 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
pancreatic ductal adenocarcinoma
  • ductal adenocarcinoma of the pancreas
breast cancer
  • breast lobular carcinoma
anterior compartment syndrome
epithelial basement membrane dystrophy
  • corneal dystrophy, epithelial basement membrane
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00339

genes like me logo Genes that share disorders with LINC00339: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00339 Gene

Publications for LINC00339 Gene

  1. An Osteoporosis Risk SNP at 1p36.12 Acts as an Allele-Specific Enhancer to Modulate LINC00339 Expression via Long-Range Loop Formation. (PMID: 29706346) Chen XF … Yang TL (American journal of human genetics 2018) 2 3
  2. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PMID: 11042152) Zhang QH … Chen Z (Genome research 2000) 2 3
  3. LINC00339 promotes cell proliferation and metastasis in pancreatic cancer via miR-497-5p/IGF1R axis. (PMID: 31128030) Zhang R … Gu G (Journal of B.U.ON. : official journal of the Balkan Union of Oncology 2019) 3
  4. [The expression and functional mechanism of long non-coding RNA LINC00339 in colorectal cancer]. (PMID: 31269584) Fu Q … Luo SX (Zhonghua yi xue za zhi 2019) 3
  5. LINC00339 promotes cell proliferation, migration, and invasion of ovarian cancer cells via miR-148a-3p/ROCK1 axes. (PMID: 31550677) Pan L … Li B (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2019) 3

Products for LINC00339 Gene

Sources for LINC00339 Gene