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Aliases for LINC00339 Gene
Subcategory (RNA class) for LINC00339 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LINC00339 Gene
External Ids for LINC00339 Gene
- HGNC: 25011
- Entrez Gene: 29092
- Ensembl: ENSG00000218510
Previous HGNC Symbols for LINC00339 Gene
- NCRNA00339
Previous GeneCards Identifiers for LINC00339 Gene
- GC01P022353
- GC01P022025
- GC01P022027
- GC01P022032
- GC01P022042
Summaries for LINC00339 Gene
GeneCards Summary for LINC00339 Gene
LINC00339 (Long Intergenic Non-Protein Coding RNA 339) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00339 include Pancreatic Ductal Adenocarcinoma and Breast Cancer.
Additional gene information for LINC00339 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00339 Gene
Genomics for LINC00339 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC00339 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC00339 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC00339 Gene
Genomic Locations for LINC00339 Gene
- chr1:22,024,531-22,032,311
- (GRCh38/hg38)
- Size:
- 7,781 bases
- Orientation:
- Plus strand
- chr1:22,351,681-22,357,716
- (GRCh37/hg19)
- Size:
- 6,036 bases
- Orientation:
- Plus strand
Genomic View for LINC00339 Gene
Genes around LINC00339 on UCSC Golden Path with GeneCards custom track
LINC00339 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 1p36.12 by HGNC
- 1p36.12 by Entrez Gene
- 1p36.12 by Ensembl
LINC00339 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC00339 Gene
Proteins for LINC00339 Gene
Post-translational modifications for LINC00339 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC00339
- Origene Custom Protein Services for LINC00339
No data available for DME Specific Peptides for LINC00339 Gene
Domains & Families for LINC00339 Gene
Gene Families for LINC00339 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00339 Gene
Function for LINC00339 Gene
Phenotypes From GWAS Catalog for LINC00339 Gene
Phenotypes for LINC00339 Gene
- GenomeRNAi human phenotypes for LINC00339:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for LINC00339 - Select products 50% OFF >
- * LINC00339 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
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- Browse CRISPR knockouts for LINC00339
miRNA Products
Inhibitory RNA Products
- Origene shrna and RNAi products in human, mouse, rat for LINC00339
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Clone Products
- Applied Biological Materials (abm): Clones for LINC00339 - Select products 50% OFF >
- * LINC00339 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00339 Gene
Localization for LINC00339 Gene
| Compartment | Confidence |
|---|---|
| extracellular | 1 |
| cytoskeleton | 1 |
| nucleus | 1 |
| cytosol | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00339 Gene
Transcripts for LINC00339 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00339 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075D5F9_9606 | lncRNA | 1206 | 5 |
HGNC: 25011, RefSeq: NR_109762, LncBook: HSALNT0002939, LNCipedia: lnc-CELA3A-5:15, NONCODE: NONHSAT148504.1, |
| URS00000839C3_9606 | lncRNA | 771 | 4 |
Ensembl: ENST00000420503 (view in UCSC) , LncBook: HSALNT0002948, LNCipedia: lnc-CELA3A-5:25, NONCODE: NONHSAT001464.2, |
| URS000075AE1B_9606 | lncRNA | 1202 | 3 |
RefSeq: NR_109761, LncBook: HSALNT0002935, LNCipedia: lnc-CELA3A-5:14, |
| URS0000759C22_9606 | lncRNA | 1127 | 3 |
RefSeq: NR_023918, LncBook: HSALNT0002923, LNCipedia: lnc-CELA3A-5:4, |
| URS000075E9D1_9606 | lncRNA | 1085 | 3 |
RefSeq: NR_023919, LncBook: HSALNT0002937, LNCipedia: lnc-CELA3A-5:12, |
LINC00339 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC00339 Gene
- 9 NCBI additional mRNA sequence :
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000648798 465 nts (view in UCSC)
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for LINC00339 - Select products 50% OFF >
- * LINC00339 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for LINC00339
miRNA Products
Inhibitory RNA Products
- Origene shrna and RNAi products in human, mouse, rat for LINC00339
- Browse OriGene Inhibitory RNA Products For LINC00339
Clone Products
- Applied Biological Materials (abm): Clones for LINC00339 - Select products 50% OFF >
- * LINC00339 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
Relevant External Links for LINC00339 Gene
- GeneLoc Exon Structure for
- LINC00339
Expression for LINC00339 Gene
mRNA differential expression in normal tissues according to GTEx for LINC00339 Gene
This gene is overexpressed in Pancreas (x7.5).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00339
SOURCE GeneReport for Unigene cluster for LINC00339 Gene:
Hs.279842Primer Products
-
OriGene qPCR primer pairs for LINC00339
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00339 Gene
Orthologs for LINC00339 Gene
No data available for Orthologs for LINC00339 Gene
Paralogs for LINC00339 Gene
No data available for Paralogs for LINC00339 Gene
Variants for LINC00339 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2758927 | CNV | loss | 17122850 |
| esv2764236 | CNV | gain+loss | 21179565 |
| nsv528664 | CNV | gain | 19592680 |
| nsv545745 | CNV | loss | 21841781 |
| nsv834413 | CNV | loss | 17160897 |
Additional Variant Information for LINC00339 Gene
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00339 Gene
Disorders for LINC00339 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| pancreatic ductal adenocarcinoma |
|
|
| breast cancer |
|
|
| anterior compartment syndrome |
|
|
| epithelial basement membrane dystrophy |
|
|
Search LINC00339 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for LINC00339
No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00339 Gene
Publications for LINC00339 Gene
- An Osteoporosis Risk SNP at 1p36.12 Acts as an Allele-Specific Enhancer to Modulate LINC00339 Expression via Long-Range Loop Formation. (PMID: 29706346) Chen XF … Yang TL (American journal of human genetics 2018) 2 3
- Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PMID: 11042152) Zhang QH … Chen Z (Genome research 2000) 2 3
- LINC00339 promotes cell proliferation and metastasis in pancreatic cancer via miR-497-5p/IGF1R axis. (PMID: 31128030) Zhang R … Gu G (Journal of B.U.ON. : official journal of the Balkan Union of Oncology 2019) 3
- [The expression and functional mechanism of long non-coding RNA LINC00339 in colorectal cancer]. (PMID: 31269584) Fu Q … Luo SX (Zhonghua yi xue za zhi 2019) 3
- LINC00339 promotes cell proliferation, migration, and invasion of ovarian cancer cells via miR-148a-3p/ROCK1 axes. (PMID: 31550677) Pan L … Li B (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2019) 3
Products for LINC00339 Gene
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- Custom Assay Services
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- OriGene qPCR primer pairs for LINC00339
- Browse CRISPR knockouts for LINC00339
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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- Browse Sino Biological cDNA Clones
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- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- antibodies-online: Search results for available LINC00339 related products ranked by validation data
- antibodies-online: Search results for available LINC00339 related products ranked by validation data
- antibodies-online: Search results for available LINC00339 related products ranked by validation data
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Sources for LINC00339 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB