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Aliases for LINC00336 Gene

Subcategory (RNA class) for LINC00336 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00336 Gene

  • Long Intergenic Non-Protein Coding RNA 336 2 3 5
  • NCRNA00336 3 4
  • C6orf227 3 4
  • Chromosome 6 Open Reading Frame 227 2
  • Non-Protein Coding RNA 336 2

External Ids for LINC00336 Gene

Previous HGNC Symbols for LINC00336 Gene

  • C6orf227
  • NCRNA00336

Previous GeneCards Identifiers for LINC00336 Gene

  • GC06M033554

Summaries for LINC00336 Gene

GeneCards Summary for LINC00336 Gene

LINC00336 (Long Intergenic Non-Protein Coding RNA 336) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00336 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00336 Gene

Genomics for LINC00336 Gene

GeneHancer (GH) Regulatory Elements for LINC00336 Gene

Promoters and enhancers for LINC00336 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I033710 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.1 -118.1 -118073 2 HDGF SMAD1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 UQCC2 LEMD2 IP6K3 DAXX BRD2 RGL2 WDR46 RXRB LINC00336 VPS52
GH06I033569 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.5 +22.0 22023 2.8 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZBTB7B IRF4 YY1 SLC30A9 BAK1 PHF1 VPS52 LINC00336 HCG25 RING1 ITPR3 TAPBP LEMD2 RPS18
GH06I033566 Enhancer 0.7 ENCODE 11.4 +26.3 26323 1.4 ZNF639 ZNF740 NR4A1 ZBTB11 E2F5 ZNF384 REST ZBTB40 ZNF395 ZNF592 BAK1 CUTA LINC00336 GC06P033564 GGNBP1
GH06I033654 Enhancer 0.4 ENCODE 11.8 -62.0 -61987 1.2 POLR2A RCOR1 CHD2 BAK1 IP6K3 ITPR3 LINC00336 GGNBP1 LEMD2 LOC105375023 MIR3934
GH06I034089 Enhancer 0.4 dbSUPER 10 -497.4 -497440 1.6 GLIS1 ZIC2 GRM4 MLN LEMD2 IP6K3 LINC00336 PIR53321
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00336 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00336 Gene

Genomic Locations for LINC00336 Gene
chr6:33,586,106-33,593,338
(GRCh38/hg38)
Size:
7,233 bases
Orientation:
Minus strand
chr6:33,553,883-33,561,115
(GRCh37/hg19)

Genomic View for LINC00336 Gene

Genes around LINC00336 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00336 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00336 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00336 Gene

Proteins for LINC00336 Gene

  • Protein details for LINC00336 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZUF6-NC336_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00336
    Protein Accession:
    Q6ZUF6

    Protein attributes for LINC00336 Gene

    Size:
    198 amino acids
    Molecular mass:
    20903 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00336 Gene

Post-translational modifications for LINC00336 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00336 Gene

Domains & Families for LINC00336 Gene

Protein Domains for LINC00336 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00336: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00336 Gene

Function for LINC00336 Gene

Phenotypes From GWAS Catalog for LINC00336 Gene

genes like me logo Genes that share phenotypes with LINC00336: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00336 Gene

Localization for LINC00336 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00336 Gene

Pathways & Interactions for LINC00336 Gene

SuperPathways for LINC00336 Gene

No Data Available

Interacting Proteins for LINC00336 Gene

Gene Ontology (GO) - Biological Process for LINC00336 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00336 Gene

Drugs & Compounds for LINC00336 Gene

No Compound Related Data Available

Transcripts for LINC00336 Gene

mRNA/cDNA for LINC00336 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00336 Gene

Long intergenic non-protein coding RNA 336:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00336 Gene

No ASD Table

Relevant External Links for LINC00336 Gene

GeneLoc Exon Structure for
LINC00336
ECgene alternative splicing isoforms for
LINC00336

Expression for LINC00336 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00336 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00336 Gene

This gene is overexpressed in Testis (x9.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for LINC00336 Gene



NURSA nuclear receptor signaling pathways regulating expression of LINC00336 Gene:

LINC00336

SOURCE GeneReport for Unigene cluster for LINC00336 Gene:

Hs.520075
genes like me logo Genes that share expression patterns with LINC00336: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00336 Gene

Orthologs for LINC00336 Gene

Evolution for LINC00336 Gene

ENSEMBL:
Gene Tree for LINC00336 (if available)
TreeFam:
Gene Tree for LINC00336 (if available)

No data available for Orthologs for LINC00336 Gene

Paralogs for LINC00336 Gene

(1) SIMAP similar genes for LINC00336 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with LINC00336: view

No data available for Paralogs for LINC00336 Gene

Variants for LINC00336 Gene

Sequence variations from dbSNP and Humsavar for LINC00336 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000819546 -- 33,585,787(-) G/A downstream_transcript_variant
rs1000874483 -- 33,592,090(-) T/C intron_variant
rs1000907117 -- 33,591,854(-) T/C intron_variant
rs1001785673 -- 33,591,879(-) G/C intron_variant
rs1001818743 -- 33,592,134(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00336 Gene

Variant ID Type Subtype PubMed ID
dgv85n68 CNV loss 17160897
esv3608630 CNV gain 21293372
nsv602833 CNV loss 21841781

Additional Variant Information for LINC00336 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00336

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00336 Gene

Disorders for LINC00336 Gene

Additional Disease Information for LINC00336

No disorders were found for LINC00336 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00336 Gene

Publications for LINC00336 Gene

  1. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos LF … Criswell LA (PLoS genetics 2009) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4 58

Products for LINC00336 Gene

Sources for LINC00336 Gene

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