Aliases for LINC00332 Gene

Subcategory (RNA class) for LINC00332 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00332 Gene

  • Long Intergenic Non-Protein Coding RNA 332 2 3 5
  • LINC00332 2 5 165
  • Non-Protein Coding RNA 332 2
  • NONHSAG013296.2 91
  • HSALNG0096537 164
  • NCRNA00332 3

External Ids for LINC00332 Gene

Previous HGNC Symbols for LINC00332 Gene

  • NCRNA00332

Previous GeneCards Identifiers for LINC00332 Gene

  • GC00U933012
  • GC13P040756

Summaries for LINC00332 Gene

GeneCards Summary for LINC00332 Gene

LINC00332 (Long Intergenic Non-Protein Coding RNA 332) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00332 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00332 Gene

Genomics for LINC00332 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00332 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J040181 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE 608.7 +9.1 9096 1.1 PKNOX1 HDAC1 ZNF600 CEBPA SOX13 MGA NFE2 FOXK2 FOXA2 ZNF316 LINC00332 lnc-FOXO1-4 LINC00548 LINC00598 FOXO1 COG6
GH13J040171 Enhancer 0.4 ENCODE 600.7 -1.4 -1366 0.2 ZBTB33 CTCF JUND LINC00332 piR-32214-142 LINC00548 LINC00598 FOXO1 COG6
GH13J040173 Enhancer 0.2 Ensembl 600.7 -1.0 -1004 0.2 LINC00332 piR-32214-142 LINC00548 LINC00598 FOXO1 COG6
GH13J040187 Promoter/Enhancer 1.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.2 +15.3 15278 2.2 ZIC2 ZFHX2 EGR2 L3MBTL2 LINC00332 FOXO1 lnc-FOXO1-4 LINC00548 LINC00598 COG6
GH13J040189 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 8 +19.7 19677 5.8 GABPA JUND NR2F2 GABPB1 RCOR1 FOSL2 TFAP4 JUN MAX ZNF660 LINC00332 FOXO1 lnc-FOXO1-4 LINC00548 LINC00598 COG6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00332 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00332 Gene

Genomic Locations for LINC00332 Gene
chr13:40,172,505-40,195,361
(GRCh38/hg38)
Size:
22,857 bases
Orientation:
Plus strand
chr13:40,755,946-40,763,165
(GRCh37/hg19)
Size:
7,220 bases
Orientation:
Plus strand

Genomic View for LINC00332 Gene

Genes around LINC00332 on UCSC Golden Path with GeneCards custom track
LINC00332 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00332 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00332 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00332 Gene

Proteins for LINC00332 Gene

Post-translational modifications for LINC00332 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00332 Gene

Domains & Families for LINC00332 Gene

Gene Families for LINC00332 Gene

genes like me logo Genes that share domains with LINC00332: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00332 Gene

Function for LINC00332 Gene

Phenotypes From GWAS Catalog for LINC00332 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00332 Gene

Localization for LINC00332 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00332 Gene

Pathways & Interactions for LINC00332 Gene

PathCards logo

SuperPathways for LINC00332 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00332 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00332 Gene

Drugs & Compounds for LINC00332 Gene

No Compound Related Data Available

Transcripts for LINC00332 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00332 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A2BE_9606 lncRNA 836 5

HGNC: 42049,

RefSeq: NR_046870,

LncBook: HSALNT0200415,

LNCipedia: LINC00332:2,

NONCODE: NONHSAT033319.2,

URS0000EF6BF3_9606 lncRNA 1605 1

Ensembl: ENST00000455241 (view in UCSC) ,

URS0000EF0178_9606 lncRNA 979 1

Ensembl: ENST00000662208 (view in UCSC) ,

URS00008B5A32_9606 lncRNA 937 3

LncBook: HSALNT0200417,

LNCipedia: LINC00332:3,

NONCODE: NONHSAT033320.2,

URS00003E514B_9606 lncRNA 834 2

LncBook: HSALNT0200414,

LNCipedia: LINC00332:1,

LINC00332 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00332 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00332 Gene

No ASD Table

Relevant External Links for LINC00332 Gene

GeneLoc Exon Structure for
LINC00332

Expression for LINC00332 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00332 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00332 Gene

This gene is overexpressed in Pancreas (x13.4), Stomach (x9.6), and Testis (x7.0).

SOURCE GeneReport for Unigene cluster for LINC00332 Gene:

Hs.578028
genes like me logo Genes that share expression patterns with LINC00332: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00332 Gene

Orthologs for LINC00332 Gene

Evolution for LINC00332 Gene

ENSEMBL:
Gene Tree for LINC00332 (if available)
TreeFam:
Gene Tree for LINC00332 (if available)

No data available for Orthologs for LINC00332 Gene

Paralogs for LINC00332 Gene

No data available for Paralogs for LINC00332 Gene

Variants for LINC00332 Gene

Additional dbSNP identifiers (rs#s) for LINC00332 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00332 Gene

Variant ID Type Subtype PubMed ID
nsv561537 CNV loss 21841781

Additional Variant Information for LINC00332 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00332

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00332 Gene

Disorders for LINC00332 Gene

Additional Disease Information for LINC00332

No disorders were found for LINC00332 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00332 Gene

Publications for LINC00332 Gene

No publications were found for LINC00332 Gene.

Products for LINC00332 Gene

Sources for LINC00332 Gene