Aliases for LINC00330 Gene

Subcategory (RNA class) for LINC00330 Gene

lncRNA

Number of RNA Genes sources:

1 / 14

Aliases for LINC00330 Gene

  • Long Intergenic Non-Protein Coding RNA 330 2 3 5
  • LINC00330 2 168
  • Non-Protein Coding RNA 330 2
  • NCRNA00330 3

External Ids for LINC00330 Gene

Previous HGNC Symbols for LINC00330 Gene

  • NCRNA00330

Previous GeneCards Identifiers for LINC00330 Gene

  • GC00U933289
  • GC13M045374

Summaries for LINC00330 Gene

GeneCards Summary for LINC00330 Gene

LINC00330 (Long Intergenic Non-Protein Coding RNA 330) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00330 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00330 Gene

Genomics for LINC00330 Gene

GeneHancer (GH) Regulatory Elements for LINC00330 Gene

Promoters and enhancers for LINC00330 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J044807 Enhancer 0.3 Ensembl 500.7 +1.5 1529 1.4 CEBPB ZNF121 LINC00330 piR-55985-043
GH13J044809 Enhancer 0.2 Ensembl 500.7 +0.1 129 0.2 LINC00330 piR-55985-043
GH13J044755 Enhancer 1.5 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.7 +51.5 51493 5.4 EP300 ZSCAN5C JUND FOS ZNF639 ZNF10 ZIC2 CLOCK RFX1 KLF4 HSALNG0096771 LINC00330 TSC22D1 SMARCE1P5 piR-43105-140
GH13J044762 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 7.1 +42.7 42694 8.9 EP300 RELA BCL11A WT1 CREB1 ZNF384 SRF CEBPB BATF IRF4 LINC00330 SMARCE1P5 HSALNG0096771 piR-55985-043
GH13J044734 Enhancer 1 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.3 +74.9 74929 1.8 EP300 STAT1 RCOR1 CHD2 YY1 GATA2 RAD21 MYC STAT3 LINC00330 piR-43105-140 HSALNG0096771
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00330 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00330 Gene

Genomic Locations for LINC00330 Gene
chr13:44,799,503-44,809,630
(GRCh38/hg38)
Size:
10,128 bases
Orientation:
Minus strand
chr13:45,373,639-45,383,766
(GRCh37/hg19)
Size:
10,128 bases
Orientation:
Minus strand

Genomic View for LINC00330 Gene

Genes around LINC00330 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00330 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00330 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00330 Gene

Proteins for LINC00330 Gene

Post-translational modifications for LINC00330 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00330 Gene

Domains & Families for LINC00330 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00330 Gene

Function for LINC00330 Gene

Phenotypes From GWAS Catalog for LINC00330 Gene

Phenotypes for LINC00330 Gene

genes like me logo Genes that share phenotypes with LINC00330: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00330 Gene

Localization for LINC00330 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00330 Gene

Pathways & Interactions for LINC00330 Gene

PathCards logo

SuperPathways for LINC00330 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00330 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00330 Gene

Drugs & Compounds for LINC00330 Gene

No Compound Related Data Available

Transcripts for LINC00330 Gene

mRNA/cDNA for LINC00330 Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00330 Gene

No ASD Table

Relevant External Links for LINC00330 Gene

GeneLoc Exon Structure for
LINC00330

Expression for LINC00330 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00330 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00330 Gene

This gene is overexpressed in Esophagus - Mucosa (x22.1), Minor Salivary Gland (x8.5), Vagina (x5.7), and Brain - Nucleus accumbens (basal ganglia) (x4.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00330

SOURCE GeneReport for Unigene cluster for LINC00330 Gene:

Hs.585616
genes like me logo Genes that share expression patterns with LINC00330: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00330 Gene

Orthologs for LINC00330 Gene

Evolution for LINC00330 Gene

ENSEMBL:
Gene Tree for LINC00330 (if available)
TreeFam:
Gene Tree for LINC00330 (if available)

No data available for Orthologs for LINC00330 Gene

Paralogs for LINC00330 Gene

No data available for Paralogs for LINC00330 Gene

Variants for LINC00330 Gene

Additional dbSNP identifiers (rs#s) for LINC00330 Gene

Additional Variant Information for LINC00330 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00330

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00330 Gene

Disorders for LINC00330 Gene

Additional Disease Information for LINC00330

No disorders were found for LINC00330 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00330 Gene

Publications for LINC00330 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for LINC00330 Gene

Sources for LINC00330 Gene