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Aliases for LINC00330 Gene

Subcategory (RNA class) for LINC00330 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00330 Gene

  • Long Intergenic Non-Protein Coding RNA 330 2 3 5
  • Non-Protein Coding RNA 330 2
  • NCRNA00330 3

External Ids for LINC00330 Gene

Previous HGNC Symbols for LINC00330 Gene

  • NCRNA00330

Previous GeneCards Identifiers for LINC00330 Gene

  • GC00U933289
  • GC13M045374

Summaries for LINC00330 Gene

GeneCards Summary for LINC00330 Gene

LINC00330 (Long Intergenic Non-Protein Coding RNA 330) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00330 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00330 Gene

Genomics for LINC00330 Gene

GeneHancer (GH) Regulatory Elements for LINC00330 Gene

Promoters and enhancers for LINC00330 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I044810 Enhancer 0.7 Ensembl 550.8 -0.7 -671 0.2 NFIA ZNF473 ZNF571 NFIB ZIK1 ZNF195 ZNF662 ZNF491 NFIC LCORL LINC00330 GPALPP1 RN7SL49P TPT1-AS1 RCN1P2 COG3 NUFIP1 ERICH6B SLC25A30-AS1 CCDC122
GH13I044757 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.7 +50.3 50324 3.1 PKNOX1 FOXA2 ZSCAN4 INSM2 KLF17 FEZF1 ZNF2 ZNF335 ZNF213 ZSCAN5C LINC00330 TSC22D1 SMARCE1P5 LOC105370185 GC13P044655
GH13I044762 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 7.1 +45.1 45109 4.1 SOX13 SRF ZNF687 ZNF449 EBF1 RARA TEAD3 NFIL3 ATF7 RCOR1 LINC00330 SMARCE1P5 LOC105370185 GC13P044655
GH13I044755 Enhancer 0.9 Ensembl ENCODE dbSUPER 7.7 +53.3 53268 1.9 JUND JUN STAT3 CEBPB EP300 ZBTB17 LINC00330 LOC105370185 GC13P044655
GH13I044768 Enhancer 1.1 Ensembl ENCODE dbSUPER 5 +40.7 40726 1.8 ZNF687 ATF1 JUNB EBF1 DPF2 BATF IRF4 ATF2 RELA BCL11A LINC00330 LOC105370185 GC13P044655
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00330 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00330 Gene

Genomic Locations for LINC00330 Gene
chr13:44,799,503-44,809,630
(GRCh38/hg38)
Size:
10,128 bases
Orientation:
Minus strand
chr13:45,373,639-45,383,766
(GRCh37/hg19)

Genomic View for LINC00330 Gene

Genes around LINC00330 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00330 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00330 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00330 Gene

Proteins for LINC00330 Gene

Post-translational modifications for LINC00330 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00330 Gene

Domains & Families for LINC00330 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00330 Gene

Function for LINC00330 Gene

Phenotypes From GWAS Catalog for LINC00330 Gene

Phenotypes for LINC00330 Gene

GenomeRNAi human phenotypes for LINC00330:
genes like me logo Genes that share phenotypes with LINC00330: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00330 Gene

Localization for LINC00330 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00330 Gene

Pathways & Interactions for LINC00330 Gene

SuperPathways for LINC00330 Gene

No Data Available

Interacting Proteins for LINC00330 Gene

Gene Ontology (GO) - Biological Process for LINC00330 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00330 Gene

Drugs & Compounds for LINC00330 Gene

No Compound Related Data Available

Transcripts for LINC00330 Gene

mRNA/cDNA for LINC00330 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00330 Gene

Long intergenic non-protein coding RNA 330:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00330 Gene

No ASD Table

Relevant External Links for LINC00330 Gene

GeneLoc Exon Structure for
LINC00330
ECgene alternative splicing isoforms for
LINC00330

Expression for LINC00330 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00330 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00330 Gene

This gene is overexpressed in Esophagus - Mucosa (x22.1), Minor Salivary Gland (x8.5), Vagina (x5.7), and Brain - Nucleus accumbens (basal ganglia) (x4.8).

NURSA nuclear receptor signaling pathways regulating expression of LINC00330 Gene:

LINC00330

SOURCE GeneReport for Unigene cluster for LINC00330 Gene:

Hs.585616
genes like me logo Genes that share expression patterns with LINC00330: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00330 Gene

Orthologs for LINC00330 Gene

Evolution for LINC00330 Gene

ENSEMBL:
Gene Tree for LINC00330 (if available)
TreeFam:
Gene Tree for LINC00330 (if available)

No data available for Orthologs for LINC00330 Gene

Paralogs for LINC00330 Gene

No data available for Paralogs for LINC00330 Gene

Variants for LINC00330 Gene

Sequence variations from dbSNP and Humsavar for LINC00330 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000297478 -- 44,811,380(-) G/A upstream_transcript_variant
rs1000987026 -- 44,808,322(-) G/A intron_variant
rs1001192415 -- 44,805,712(-) A/G intron_variant
rs1001231974 -- 44,802,799(-) T/C intron_variant
rs1001829943 -- 44,807,784(-) A/T intron_variant

Additional Variant Information for LINC00330 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00330

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00330 Gene

Disorders for LINC00330 Gene

Additional Disease Information for LINC00330

No disorders were found for LINC00330 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00330 Gene

Publications for LINC00330 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC00330 Gene

Sources for LINC00330 Gene

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