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Aliases for LINC00327 Gene

Subcategory (RNA class) for LINC00327 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00327 Gene

  • Long Intergenic Non-Protein Coding RNA 327 2 3 5
  • Non-Protein Coding RNA 327 2
  • NCRNA00327 3

External Ids for LINC00327 Gene

Previous HGNC Symbols for LINC00327 Gene

  • NCRNA00327

Previous GeneCards Identifiers for LINC00327 Gene

  • GC13P024045

Summaries for LINC00327 Gene

GeneCards Summary for LINC00327 Gene

LINC00327 (Long Intergenic Non-Protein Coding RNA 327) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00327 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00327 Gene

Genomics for LINC00327 Gene

GeneHancer (GH) Regulatory Elements for LINC00327 Gene

Promoters and enhancers for LINC00327 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J023465 Promoter/Enhancer 1.4 Ensembl ENCODE 650.7 +0.4 418 2 PKNOX1 ARID4B SIN3A ZNF2 ZNF48 RUNX3 MXD4 REST KAT8 ZNF585B LINC00327 C1QTNF9B MIPEP PCOTH TNFRSF19 LINC00352
GH13J023487 Enhancer 1.1 FANTOM5 Ensembl ENCODE 7.3 +21.8 21846 1.4 NCOA3 PKNOX1 CLOCK NFIB NEUROD1 BMI1 CTBP1 GATA3 FOS STAT1 LINC00327 LINC00352
GH13J023468 Enhancer 0.6 ENCODE 0.7 +3.6 3579 2.6 SOX13 RFX1 MNT FEZF1 POLR2A SCRT2 RCOR1 CUX1 KDM1A RUNX3 C1QTNF9B MIPEP PCOTH SACS TNFRSF19 LINC00327 LINC00352
GH13J023447 Enhancer 0.8 Ensembl ENCODE 0.4 -17.1 -17104 3.8 JUND PKNOX1 PRDM6 POLR2A MAX RCOR1 FOS MYC CHD2 C1QTNF9 SACS LINC00327
GH13J023460 Enhancer 0.6 Ensembl 0.4 -5.8 -5770 0.4 POLR2A CBFB MAX JUNB ETV6 BCLAF1 ATF2 CREM SACS MIPEP PCOTH C1QTNF9B TNFRSF19 LINC00327
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00327 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00327 Gene

Genomic Locations for LINC00327 Gene
chr13:23,466,571-23,487,464
(GRCh38/hg38)
Size:
20,894 bases
Orientation:
Plus strand
chr13:24,040,710-24,061,603
(GRCh37/hg19)
Size:
20,894 bases
Orientation:
Plus strand

Genomic View for LINC00327 Gene

Genes around LINC00327 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00327 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00327 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00327 Gene

Proteins for LINC00327 Gene

Post-translational modifications for LINC00327 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00327 Gene

Domains & Families for LINC00327 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00327 Gene

Function for LINC00327 Gene

Phenotypes From GWAS Catalog for LINC00327 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00327 Gene

Localization for LINC00327 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00327 Gene

Pathways & Interactions for LINC00327 Gene

SuperPathways for LINC00327 Gene

No Data Available

Interacting Proteins for LINC00327 Gene

Gene Ontology (GO) - Biological Process for LINC00327 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00327 Gene

Drugs & Compounds for LINC00327 Gene

No Compound Related Data Available

Transcripts for LINC00327 Gene

mRNA/cDNA for LINC00327 Gene

(4) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Unigene Clusters for LINC00327 Gene

Long intergenic non-protein coding RNA 327:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00327 Gene

No ASD Table

Relevant External Links for LINC00327 Gene

GeneLoc Exon Structure for
LINC00327
ECgene alternative splicing isoforms for
LINC00327

Expression for LINC00327 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00327 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00327 Gene:

LINC00327

SOURCE GeneReport for Unigene cluster for LINC00327 Gene:

Hs.50118
genes like me logo Genes that share expression patterns with LINC00327: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00327 Gene

Orthologs for LINC00327 Gene

Evolution for LINC00327 Gene

ENSEMBL:
Gene Tree for LINC00327 (if available)
TreeFam:
Gene Tree for LINC00327 (if available)

No data available for Orthologs for LINC00327 Gene

Paralogs for LINC00327 Gene

No data available for Paralogs for LINC00327 Gene

Variants for LINC00327 Gene

Sequence variations from dbSNP and Humsavar for LINC00327 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000218837 -- 23,481,032(+) C/T intron_variant
rs1000282055 -- 23,481,761(+) C/T intron_variant
rs1000288783 -- 23,487,827(+) A/T downstream_transcript_variant
rs1000337651 -- 23,484,682(+) A/G intron_variant
rs1000418814 -- 23,481,399(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00327 Gene

Variant ID Type Subtype PubMed ID
dgv1615n100 CNV gain 25217958
dgv3084n54 CNV gain 21841781
dgv928n106 CNV deletion 24896259
esv1587163 CNV deletion 17803354
esv2329718 CNV deletion 18987734
esv2422502 CNV duplication 17116639
esv2647023 CNV deletion 19546169
esv2751136 CNV loss 17911159
esv3550179 CNV deletion 23714750
esv3580576 CNV loss 25503493
esv3631523 CNV gain 21293372
esv3892311 CNV gain 25118596
esv3892319 CNV gain 25118596
esv3892320 CNV loss 25118596
esv5325 OTHER complex 18987735
esv7554 CNV loss 19470904
nsv1039189 CNV gain 25217958
nsv1069738 CNV deletion 25765185
nsv1078303 OTHER inversion 25765185
nsv1140246 OTHER inversion 24896259
nsv1146732 CNV deletion 26484159
nsv1151909 OTHER inversion 26484159
nsv455837 CNV gain 19166990
nsv525965 CNV gain 19592680
nsv561292 CNV loss 21841781
nsv561334 CNV gain 21841781
nsv64693 CNV deletion 16902084
nsv832565 CNV gain 17160897
nsv958112 CNV deletion 24416366

Additional Variant Information for LINC00327 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00327

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00327 Gene

Disorders for LINC00327 Gene

Additional Disease Information for LINC00327

No disorders were found for LINC00327 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00327 Gene

Publications for LINC00327 Gene

  1. Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study. (PMID: 25189868) Sung YJ … Rao DC (American journal of hypertension 2015) 3 58
  2. Novel associations for hypothyroidism include known autoimmune risk loci. (PMID: 22493691) Eriksson N … Do CB (PloS one 2012) 3 58
  3. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. (PMID: 15790807) Cheng J … Gingeras TR (Science (New York, N.Y.) 2005) 3 58

Products for LINC00327 Gene

Sources for LINC00327 Gene

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